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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022555-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | SRS | ||||||||
Protein Properties | Length: 251aa MW: 27224.3 Da PI: 7.4484 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 106.8 | 3.5e-33 | 61 | 118 | 3 | 60 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 + ++CqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpaa+rrer qq+ SMil_00022555-RA_Salv 61 VEMINCQDCGNQAKKDCEHMRCRTCCKSRGFPCQTHVKSTWVPAARRRERLQQQVVRG 118 56789*********************************************88876544 PP | |||||||
2 | DUF702 | 88.7 | 1.3e-27 | 127 | 189 | 92 | 154 |
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +sa ++ +e+ ++P+ev+s+avfrcvrvs++dd+ee laYqtav+igGhvfkGiLydqG+++ SMil_00022555-RA_Salv 127 NSAGATGGFEVGQFPPEVNSPAVFRCVRVSAMDDAEETLAYQTAVNIGGHVFKGILYDQGPDS 189 4555566789999************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.2E-55 | 64 | 188 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-27 | 65 | 107 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.2E-26 | 139 | 187 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSGFLSLSHR DDHEEIYNKG FELCQQQQHS KQDVGVSSRQ SYGSGAVELG FDAMSGGVGR 60 VEMINCQDCG NQAKKDCEHM RCRTCCKSRG FPCQTHVKST WVPAARRRER LQQQVVRGEN 120 LKRLRENSAG ATGGFEVGQF PPEVNSPAVF RCVRVSAMDD AEETLAYQTA VNIGGHVFKG 180 ILYDQGPDSR YHGGGGGESS GGSQPHQLAA APPSAVATTS NLNASILDAS MYPNQLSSYM 240 SGTQFFLPPR P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002280777.1 | 3e-91 | PREDICTED: protein SHI RELATED SEQUENCE 5 | ||||
Swissprot | Q9LQZ5 | 1e-64 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A4D8Y952 | 7e-94 | A0A4D8Y952_SALSN; Uncharacterized protein | ||||
STRING | VIT_18s0001g13420.t01 | 1e-90 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 4e-59 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
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