PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022520-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 230aa MW: 26746.1 Da PI: 6.5189 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.9e-36 | 26 | 116 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y+i++d++++++isw+ +g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g SMil_00022520-RA_Salv 26 FLTKTYQIVDDRAVDDIISWNVDGSAFIVWNPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRG 104 9*****************************************************************99.........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +++ll++i+r++ SMil_00022520-RA_Salv 105 ETHLLRDIQRRR 116 **********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.5E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.43E-35 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.8E-38 | 24 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MASPSVDRKG GESWGEDMPR LLPTPFLTKT YQIVDDRAVD DIISWNVDGS AFIVWNPAEF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNEC FRRGETHLLR DIQRRRMAAK 120 SEDQAVGSPA ELIDENERLR QQNVQLNEEL RHMKNLCSNI YALMSNYAGS EEHARARACK 180 SYMTENVKPL ELLPMTRFCQ EMTRKGRETE ATSAEHHMDL ELRLPGDGRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 15 | 115 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 15 | 115 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 15 | 115 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN896307 | 1e-32 | JN896307.1 Glycine max heat shock transcription factor HSFB2a mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076201.1 | 1e-103 | heat stress transcription factor B-2a | ||||
Refseq | XP_011076202.1 | 1e-103 | heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 1e-72 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A2Z4K5C0 | 1e-108 | A0A2Z4K5C0_TECGR; HSF2 protein | ||||
STRING | Migut.F00357.1.p | 1e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-75 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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