PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022202-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 415aa    MW: 45886.8 Da    PI: 5.621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022202-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.39.9e-17252298455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ ErrRRdriN+++  L+el+P+a      K +Ka++L +A+eY+k Lq
  SMil_00022202-RA_Salv 252 VHNMSERRRRDRINEKMKALQELIPHA-----NKSDKASMLDEAIEYMKALQ 298
                            5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.39248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-20251324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-16251302No hitNo description
PfamPF000103.3E-14252298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-19252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-17254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDACLPDWNT DVGGEFLLPL QRKPLGLENE LIELLWQNGE IVLHSQTNRK QTKQIRDPNQ  60
CGLIQDDDEA VSWIDCPIDE SFERDFCANF LSEIPPPNLD ESSKGETEFK SGASEVIPQG  120
FAPPPPPRFE AAEAVARHQP QMPGRSRECS GMTLGSSHCA SNQVDLSWAS SCGVGTMAAG  180
AINEGVEREA PGQARESCSG GSGSSLWKTS RHKRKSRDME ESECPSDATE SESAGGNKAK  240
NGTARRSRVA EVHNMSERRR RDRINEKMKA LQELIPHANK SDKASMLDEA IEYMKALQLQ  300
IQLMWMGRGM GMAPVMLPGM QHYMSRVGMG IGPTMLPGIH NLMRLSRLPL VDQAMSVPPA  360
GHNPMLNPVN YPNQMQSSSF QEQYANYVNF HSMQSANSPQ VCVLPYTCHD PMYLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574960.0KP257496.1 Salvia miltiorrhiza clone 63 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.11e-158transcription factor PIF4
RefseqXP_011100372.11e-158transcription factor PIF4
TrEMBLA0A0H3Y7J80.0A0A0H3Y7J8_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.M00105.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.18e-45phytochrome interacting factor 3-like 6