PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022190-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 294aa    MW: 33870 Da    PI: 9.5759
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022190-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-2580123144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  SMil_00022190-RA_Salv  80 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 123
                            79***************************************986 PP
2QLQ58.12.7e-201347236
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           +FTa+Q+q+L++Q+l++Ky+++++P+Pp+Ll+ i+
  SMil_00022190-RA_Salv 13 PFTASQWQELEHQALVFKYMVSGMPIPPDLLFTIR 47
                           8******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.1E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.4E-161347IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0481348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94180124IPR014977WRC domain
PfamPF088792.5E-2181123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
LMMSGSVRSS RFPFTASQWQ ELEHQALVFK YMVSGMPIPP DLLFTIRTSL DSSLSSKFLI  60
HQPQHIGWNS FHMGFGRKID PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  120
PVEILSPTTA ATPRNAHPPS SSSTPISSEP HFLYPHFPSS RPAAADSTNF FLDSRPPLKD  180
FRHGNGIKGE NEFFSSDSNP YSSSKLEPLK MELKHNNAAY LSDQSYRQYQ HDRYYSAAER  240
AEEQPKKVMH HFLEEWAPKD AEPWSNADDK MPTHRTQLSI SVPNSLHDFF VTQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700704e-33KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093817.11e-116growth-regulating factor 1 isoform X1
RefseqXP_020553366.11e-116growth-regulating factor 1 isoform X2
TrEMBLA0A4D9AH691e-140A0A4D9AH69_SALSN; Uncharacterized protein
STRINGXP_009767378.13e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-58growth-regulating factor 5