PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021973-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 302aa    MW: 33186.9 Da    PI: 4.9473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021973-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-112292691055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L++l+P+      +K++ +++Le+AveY+k Lq
  SMil_00021973-RA_Salv 229 RKRRERINERLKILQTLVPNG-----TKVDISTMLEEAVEYVKFLQ 269
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14219285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-13224278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-13228273No hitNo description
PfamPF000104.1E-9229269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEHVGAVIPQ GEWNSLSGIM CSEEAEFMAE LLGNCSLPNE ATSPAIWPPH RNIEAALYSS  60
DETMCFSFSQ GSGSGFLSPF SSQEISYYST LSHHASLPNN NYSTNVMGGA DDVFNDSTES  120
NNDVVPEEEK KLGSSPCKSN KRSRVPCEIP RSKKSMKCSR CICDDDNNNN AVAHRQQTSS  180
SCCSEDEYSN ELMGTTSCSS SKGGRAPNPN AKTRASRGSA TDPQSLYARK RRERINERLK  240
ILQTLVPNGT KVDISTMLEE AVEYVKFLQL QIKLLSSDDL WMYAPIAYNG MDIGLDLRPQ  300
SS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574950.0KP257495.1 Salvia miltiorrhiza clone 62 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836777.17e-99PREDICTED: transcription factor bHLH54-like
TrEMBLA0A0H3YC470.0A0A0H3YC47_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.B00443.1.p3e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-59bHLH family protein