PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00021973-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 302aa MW: 33186.9 Da PI: 4.9473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021973-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	229	269	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+AveY+k Lq SMil_00021973-RA_Salv 229 RKRRERINERLKILQTLVPNG-----TKVDISTMLEEAVEYVKFLQ 269 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-14	219	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-13	224	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-12	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.91E-13	228	273	No hit	No description
Pfam	PF00010	4.1E-9	229	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEHVGAVIPQ GEWNSLSGIM CSEEAEFMAE LLGNCSLPNE ATSPAIWPPH RNIEAALYSS 60 DETMCFSFSQ GSGSGFLSPF SSQEISYYST LSHHASLPNN NYSTNVMGGA DDVFNDSTES 120 NNDVVPEEEK KLGSSPCKSN KRSRVPCEIP RSKKSMKCSR CICDDDNNNN AVAHRQQTSS 180 SCCSEDEYSN ELMGTTSCSS SKGGRAPNPN AKTRASRGSA TDPQSLYARK RRERINERLK 240 ILQTLVPNGT KVDISTMLEE AVEYVKFLQL QIKLLSSDDL WMYAPIAYNG MDIGLDLRPQ 300 SS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257495	0.0	KP257495.1 Salvia miltiorrhiza clone 62 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836777.1	7e-99	PREDICTED: transcription factor bHLH54-like
TrEMBL	A0A0H3YC47	0.0	A0A0H3YC47_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.B00443.1.p	3e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	4e-59	bHLH family protein