PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021857-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 145aa    MW: 15637 Da    PI: 9.5146
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021857-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.51.5e-1215501449
                           HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +Rr g++ KA+EL +LC+aev v++ s+ +kl+ +
  SMil_00021857-RA_Salv 15 QQRRGGLFYKASELAILCGAEVVVLVQSPADKLFAF 50
                           57*******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.596154IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-141368IPR002100Transcription factor, MADS-box
PfamPF003191.7E-121550IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVSLKATVVA EQTPQQRRGG LFYKASELAI LCGAEVVVLV QSPADKLFAF GHPSVGALID  60
RVCPSPKASS PFSPPPNPNF SFLHPPPPPL LAAGTSPPHL SSPFSSPQCS TTTDTTCSRR  120
DDDRAAIVVP LIPKLWVRIR RERRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082426.14e-17agamous-like MADS-box protein AGL62
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-16AGAMOUS-like 62