 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
SMil_00021464-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
MYB_related |
| Protein Properties |
Length: 226aa MW: 25691.8 Da PI: 7.048 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00021464-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.7 | 2e-16 | 107 | 149 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++ WT+eEd +l++a+++ G++ W+ a+++ gRt++++k++w+
SMil_00021464-RA_Salv 107 KDVWTEEEDRILIEAHAEIGNK-WAEMAKRLA-GRTENSIKNHWN 149
578*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MGCAAMQGFH GGGFLNFDDT DFHKENGVKR DKYGANDTAS ASAKTPKAKS GKGQWTPEED 60
RLINNYVDPF GGEIWREKVV TNRASGEGED RKAMRYKLIF QTNLLQKDVW TEEEDRILIE 120
AHAEIGNKWA EMAKRLAGRT ENSIKNHWNA TKRRQLSRRK CRPTSLLQNY IKSLSLEKGS 180
RSLRNTTAPD IEMDDFSFMD DFGSAPPPCF EMDLHGLKED FDFAMG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 8e-20 | 52 | 156 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-19 | 52 | 156 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-19 | 52 | 156 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-19 | 51 | 156 | 26 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 7e-20 | 52 | 156 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-20 | 52 | 156 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF059529 | 0.0 | KF059529.1 Salvia miltiorrhiza MYB-related transcription factor (MYB65) gene, complete cds. |
