PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021379-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 335aa MW: 36871.3 Da PI: 7.7901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021379-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	230	263	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +A++YIk L SMil_00021379-RA_Salv 230 LGDRVTALQQLVSPF-----GKTDTASVLHEAIDYIKLL 263 555666677777776.....8****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.426	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-10	224	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.18E-5	224	267	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-6	228	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042631	Biological Process	cellular response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071472	Biological Process	cellular response to salt stress
GO:2000214	Biological Process	regulation of proline metabolic process
GO:2000377	Biological Process	regulation of reactive oxygen species metabolic process
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MMADDWNQDL IHDSARSQQN YSHMLQSMNP SMITPRQKIA EQWTAGGDFN ADSSPGSFRQ 60 VYQNLVVPNS VATSQGLPAT SFPLNTASYS YTSSLLHTFF DADSQPLLEN EETNFSSSPP 120 NFPAEVVPSL RPSFPKPQQL ANNFQFINNT AFWNATAASS FLPSSTPQLI PSALTKPKLN 180 QQSFGSKNLN GKAGEADSAA KKDGNEAAFK RPRIETPSPL PTFKVRKEKL GDRVTALQQL 240 VSPFGKTDTA SVLHEAIDYI KLLHDQVTVL STPYLKNGPP HLQRQKAHDK TKDQEEPIKD 300 LKSRGLCLVP ISSTFPVATE TTADFWTPTF GASLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096171.1	1e-106	transcription factor bHLH112 isoform X1
Swissprot	Q94JL3	2e-59	BH112_ARATH; Transcription factor bHLH112
TrEMBL	A0A4D9ARZ8	1e-149	A0A4D9ARZ8_SALSN; Uncharacterized protein
STRING	cassava4.1_006806m	1e-94	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	8e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]