PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021109-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33675.9 Da PI: 6.877 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.2e-51 | 10 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+GfrFhPtd+elvv+yL++k++g+++++ +++e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg SMil_00021109-RA_Salv 10 LPAGFRFHPTDDELVVHYLCRKCAGQPISV-PIVAEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGA 96 799***************************.88***************7666789********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v + ++ g+kk Lvfy g+apkg+kt+W+mheyrl SMil_00021109-RA_Salv 97 DKPVGK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 134 ****98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-61 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.441 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-27 | 11 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MKGGEQQLNL PAGFRFHPTD DELVVHYLCR KCAGQPISVP IVAEIDLYKF DPWQLPEMAL 60 YGEKEWYFFS PRDRKYPNGS RPNRAAGTGY WKATGADKPV GKPKTLGIKK ALVFYAGKAP 120 KGVKTNWIMH EYRLANVDRS AGKRSNLRLD DWVLCRIYNK KRTLEKHYNV DEKEVQFSDS 180 EDQKPNVDSV MAAPPRMNEY MHFETSESMP KWHATDSSSS EHAPSSSPEF VCDKEVESRS 240 KWSEFDTYLD TQLNFMDAGG FQDNFYNAGA QMQYTDQFPL FSDMYAFMQK PF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-86 | 2 | 166 | 7 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF760207 | 0.0 | JF760207.1 Salvia miltiorrhiza NAC domain-containing protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099683.1 | 1e-166 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-116 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | G8E9N5 | 0.0 | G8E9N5_SALMI; NAC domain-containing protein 1 | ||||
STRING | Migut.H00825.1.p | 1e-148 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-112 | NAC family protein |