PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021060-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 549aa    MW: 60761.6 Da    PI: 5.3491
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021060-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.17.4e-27206259155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr+ Wt+e+H++F++a+e+L G +kA+Pk+i+e+m+v+gLt+e+v+SHLQkYR 
  SMil_00021060-RA_Salv 206 KPRVTWTNEMHQKFLDAIEKL-GYDKAVPKKIVEVMGVPGLTRENVASHLQKYRC 259
                            79*******************.********************************6 PP
2Response_reg22.84.5e-0927108182
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH.HHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell.kekd.pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                            +l+v D+++ +++++++l++ +y ev ++ +   al+ + ++kd  Dl+++     ++dG +++++i+e+  kl+++++ + g 
  SMil_00021060-RA_Salv  27 ILVVNDDQACQSNVAEVLRRCNY-EVLHTGTVYGALHSIwENKDrLDLVMTNAHKLELDGAAIIQNIKERL-KLKVLLIPSDGR 108
                            89*********************.999899999888877444447**********************9987.899988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-722121IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.9E-725112No hitNo description
PROSITE profilePS5129410.599203265IPR017930Myb domain
SuperFamilySSF466896.57E-20204263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27205263IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-26206259IPR006447Myb domain, plants
PfamPF002491.1E-6208258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MYLDEHIEEN SSLFPEMNVN KAISIGILVV NDDQACQSNV AEVLRRCNYE VLHTGTVYGA  60
LHSIWENKDR LDLVMTNAHK LELDGAAIIQ NIKERLKLKV LLIPSDGRVE PRGELLNFSV  120
YFLSGLSING VSKLLNAKRV KEDKIGAAAN QQENVEMASI SNAAVGTNKA SSSIKDAALV  180
NQKQKAVEVC RERSEDSNDD QYKGKKPRVT WTNEMHQKFL DAIEKLGYDK AVPKKIVEVM  240
GVPGLTRENV ASHLQKYRCS MRRTQETIFG SLPCIRTRTE LGGFGALTSP STSKDLVFCS  300
RSEGKFSHLS DVRNMMQRRD KHFTSSSDNS GTSKFVGYRF IGNQIDYGPI NKSNTDAVFS  360
TTGRWEHQPT SYVQHHHPFP DQNTNVTAGC ILQQSSLLSS SASRIHGAET AGIDTSQEPD  420
LLSSYALQNE SLLEGPPTQQ PQQISVQKSG DCRESLLHQL QSWDTSANAA PHQDLSLPPL  480
EAPGNGFSDQ APAGFFDDIL QQHCSPSPQN LDDIFGQGGN DDYVINGTGN IYDQFDIQEF  540
DDTLFSQDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-19205263462ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8YG380.0A0A4D8YG38_SALSN; Two-component response regulator ARR-B family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-34response regulator 10