PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020909-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93628.8 Da    PI: 5.8656
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020909-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182583357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SMil_00020909-RA_Salv 25 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                           6789*****************************************************97 PP
2START158.65e-501723792204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++  +i +g 
  SMil_00020909-RA_Salv 172 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVASAIPTGn 258
                            68999*****************************************************.8999999999******************* PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++ +a+++l++ Rdf+++Ryi +l++g++vi+++S++s++  p       +vRae+lpSg+li+p+++g+s +++v+h+d
  SMil_00020909-RA_Salv 259 gGTIELVYMQVYAPTTLASaRDFWTLRYITSLEDGSLVICERSLTSTTGGPAgppATCFVRAEMLPSGYLIRPCEGGGSIIHIVDHID 346
                            ************************************************9999888889****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                             ++ +++++lr+l++s+ + ++k+++a+l++ +
  SMil_00020909-RA_Salv 347 FDACSVPEVLRPLYESSKILAQKMTMAALRHIR 379
                            *****************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-19583IPR009057Homeodomain-like
PROSITE profilePS5007115.4992084IPR001356Homeobox domain
SMARTSM003891.1E-152288IPR001356Homeobox domain
CDDcd000861.60E-162585No hitNo description
PfamPF000466.8E-162583IPR001356Homeobox domain
SuperFamilySSF466893.42E-162587IPR009057Homeodomain-like
CDDcd146861.82E-677116No hitNo description
PROSITE profilePS5084823.452162390IPR002913START domain
CDDcd088751.75E-67166382No hitNo description
Gene3DG3DSA:3.30.530.204.4E-19170376IPR023393START-like domain
SMARTSM002345.8E-44171381IPR002913START domain
PfamPF018521.6E-47172379IPR002913START domain
SuperFamilySSF559614.4E-35172383No hitNo description
SuperFamilySSF559619.34E-5420499No hitNo description
SuperFamilySSF559619.34E-5532607No hitNo description
PfamPF086705.3E-49711855IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MALSMHRDSN SSGSSKQQQQ MDASKYVRYT PEQVDALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY  120
ENGYMRQQLH TVSSTTDTSC DSVVMSGQQQ QQNPTPQHPQ RDTNTPAGLL AIAEETLAEF  180
LGKATGTAVD WVQMIGMKPG PDSIGIVAVS RNCSGVAARA CGLVSLEPTK VAEILKDRLS  240
WFRDCRCLDV ASAIPTGNGG TIELVYMQVY APTTLASARD FWTLRYITSL EDGSLVICER  300
SLTSTTGGPA GPPATCFVRA EMLPSGYLIR PCEGGGSIIH IVDHIDFDAC SVPEVLRPLY  360
ESSKILAQKM TMAALRHIRQ IAQETNGEIQ YSGGRQPAVL RALSQRLCRG FNDAVNGFVD  420
DGWSIMSSDG AEDVTIAINS SPSKFLGSQY NNLSMLPTFG GVLCARASML LQNVPPALLV  480
RFLREHRSEW ADYGVDVYSA ASLKASPYAV PCSKPGGFPS SQVILPLAQT VEHEEFLEVV  540
RLEGHAFSPE DIALSRDMYL LQLCSGIDET TTGACAQLVF APIDESFGDD APLLPSGFRV  600
IPLEPKSVGC YSDGPAATRT LDLASALDVG HGGARSAGEA DTSSQNLRSV LTIAFQFTFE  660
NHYQENVAAM ARQYVRSIVA SVQRVAMAIA PSQLSSHMVP KPLPGSPEAV TLAQWICRSY  720
SVHTGGELLQ TDSPAGDAVL KQLWHHSDAI MCCTVKMNAS AVFTFANQAG LDMLETTLVA  780
LQDIMLEKIL DEAGRKILLS EFSKIMQQGF AYLPAGVCVS SMGRPVSYEQ AVAWKVLDDE  840
DANHCLAFMF MNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A4D8Y3520.0A0A4D8Y352_SALSN; Homeobox-leucine zipper protein
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]