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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020886-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 584aa MW: 65126.8 Da PI: 4.3634 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.7 | 4.1e-31 | 32 | 146 | 2 | 106 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknra 77 pGfrF Ptd el+ +yL+kk++++++ + + ik++++ +v+PwdL+ k +++ewyfF++rd+ky++g+r+ r SMil_00020886-RA_Salv 32 LPGFRFVPTDTELILYYLQKKINNEPILC-DGIKDTNLKQVNPWDLQGsrffvfkillskFPKLGDDEWYFFTPRDRKYPNGERPDRG 118 59************************999.88**************945799998877752233889********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktL 106 +sgyWkatg dk+v++ ++ +vg kk L SMil_00020886-RA_Salv 119 SESGYWKATGADKPVIV-GDVTVGFKKAL 146 *****************.999******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-36 | 24 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.002 | 31 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-15 | 33 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MDDQETEQRH SEDEQIPAPA APMAVPEWKN YLPGFRFVPT DTELILYYLQ KKINNEPILC 60 DGIKDTNLKQ VNPWDLQGSR FFVFKILLSK FPKLGDDEWY FFTPRDRKYP NGERPDRGSE 120 SGYWKATGAD KPVIVGDVTV GFKKALLDDW VLCRMYEKST RLTNKRKNPN AKEQTDDDWE 180 TAPLENDDDC EIAAAVENLP RIFPENPYPF NYYYHEQNPA YLQDILKQST FAGYQEANPS 240 FSDVYFQLDG IVAPPVEEQG ININSYVNDE PSASGFQQLL PPQPNIASSS TWRSNEASSS 300 YVNDEPSASG CQQPSAQPNI ASSSTWRSNE AFFPASINTN IYPPIYNQID AQQDMKIDAQ 360 ENTSRGIGRY LGHPLRIDGA SAGRDFDTCR RNKAGIQAVN PDDGVVIKEG RKRVLETLHA 420 PVDGAVVDAL VTTVENSFVV SGLGVEKSAA AGTKHDKPAV NDKEVDEDIE METPAGNPAE 480 IVTTAADLES EGNNSQAKSL ALVNAKQAKK LEQANELVAG VTCLFPVFIS YVSMDDGMFG 540 FYCNACRMMM MMMTMMMMCD YDVSQGMQMP VDQAPPKRRG CPPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-30 | 30 | 158 | 14 | 168 | Stress-induced transcription factor NAC1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 7e-33 | NAC domain containing protein 47 |