PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00020766-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 292aa MW: 32794.5 Da PI: 4.7425 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.7 | 4.3e-34 | 8 | 100 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F++k+y+il+d++++ +i w + +nsf+vl++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g SMil_00020766-RA_Salv 8 FVMKTYQILSDPTTNGMIAWGRANNSFIVLEPLHFSQTILPLYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRG 86 9********************999*****************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +++ll++i rkk++ SMil_00020766-RA_Salv 87 QTQLLSNIVRKKQA 100 ***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.35E-32 | 4 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-48 | 4 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.0E-35 | 4 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.7E-17 | 8 | 31 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-28 | 8 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-17 | 46 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 47 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-17 | 59 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MQSEIAPFVM KTYQILSDPT TNGMIAWGRA NNSFIVLEPL HFSQTILPLY FKHNNFSSFV 60 RQLNTYGFRK VDPDRWEFAN EWFLRGQTQL LSNIVRKKQA SATTDASFMI KHQADEDDDD 120 DDDDELEVEI AKLRQEQESL GDELESMSRR LQARERRPRQ MMTFLCKVAQ DPQILPQIML 180 MNNTNDTHLI TYDTSSSKRS KIMESSSTSS SSSSSSSGMT ISSSSVKSGE DLDGRISWQE 240 HHGYATLSSS STAGAPLMNG SGGGVCLSYF EDLEMATQKP APYPFSLLEG GF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-25 | 3 | 97 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-25 | 3 | 97 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-25 | 3 | 97 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287427.1 | 1e-88 | PREDICTED: heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 7e-68 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A4D9BJ20 | 1e-110 | A0A4D9BJ20_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | XP_004287427.1 | 4e-88 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6832 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24520.1 | 4e-60 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
---|---|---|---|
|