PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020646-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 163aa MW: 19282.5 Da PI: 6.7223

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020646-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.4e-21	42	97	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t +q++++e++F+++++p+a++r eL++ lgL+ q+k+WFqN+R+++k SMil_00020646-RA_Salv 42 RKRYHRHTMHQIQAMEAFFKECPHPDAKQRNELSQALGLEPLQIKFWFQNKRTQMK 97 789999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-22	23	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-19	30	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.325	39	99	IPR001356	Homeobox domain
SMART	SM00389	6.9E-19	40	103	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-18	42	97	IPR001356	Homeobox domain
CDD	cd00086	1.09E-14	42	100	No hit	No description
PRINTS	PR00031	9.8E-5	70	79	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	74	97	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.8E-5	79	95	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDGNSILSEG EEDRRINDEE VDNKSSDDDV DIDSPENRHH KRKRYHRHTM HQIQAMEAFF 60 KECPHPDAKQ RNELSQALGL EPLQIKFWFQ NKRTQMKSKH EREQNKHLRA ENEKLRAENM 120 RYKEALSNAS CPACGRMAAI SDVSLDERQL RMENARLREE VII

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269\|PubMed:11846882}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267734.1	1e-65	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Refseq	XP_019054556.1	1e-65	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
Swissprot	Q6ZAR0	1e-62	ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBL	A0A4D9A7G2	3e-97	A0A4D9A7G2_SALSN; Homeobox-leucine zipper protein
STRING	XP_010267734.1	4e-65	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	3e-54	homeodomain GLABROUS 2

Publications ? help Back to Top
Lee JH, et al. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell, 2008. 20(1): p. 152-67 [PMID:18223036] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]