PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020527-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | DBB | ||||||||
Protein Properties | Length: 315aa MW: 34764.1 Da PI: 7.2338 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.4 | 5.8e-08 | 32 | 72 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e+ ++C+ ++ lC+ C H+ H+ SMil_00020527-RA_Salv 32 ILCDVCDKGEAAFYCTADEASLCAACDHRVHHAnklagkHQ 72 57******88******************9964446777776 PP | |||||||
2 | zf-B_box | 22.4 | 2.5e-07 | 85 | 121 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e + lfC++++ lC++C +Hk Ht SMil_00020527-RA_Salv 85 PLCDICQERGAFLFCQEDRAILCRECDIPIHKAnqHT 121 68******99*********************877775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.85 | 29 | 76 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-10 | 29 | 76 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.55E-5 | 32 | 76 | No hit | No description |
PROSITE profile | PS50119 | 9.599 | 82 | 129 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-13 | 82 | 129 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 85 | 121 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.31E-9 | 85 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
LPSLFLLSTP PTPPPHLIPL FISLHHQQQM KILCDVCDKG EAAFYCTADE ASLCAACDHR 60 VHHANKLAGK HQRFSLLHPS PKHTPLCDIC QERGAFLFCQ EDRAILCREC DIPIHKANQH 120 TQKHSRFLLT GVRLSASPAL YSESPAAPAT CTPPPAKGTT AQDHKSTSNL HFSTSSISEY 180 LIETLPGWHV EDLLDSSSPS PSAFCKSADS DLVLPFWEGD LHSNSINSSG FPTENMGFWV 240 PQVQVHQNQS QSFLFNNDSV GFGLGNANGR RDQFKEFSTN SIRSTRKRSD DNSFAVPQIS 300 PSSAAVSIKR SKLFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074989.1 | 1e-110 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 3e-79 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A4D8Z7U9 | 1e-134 | A0A4D8Z7U9_SALSN; Uncharacterized protein | ||||
STRING | Migut.N03131.1.p | 1e-108 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-73 | salt tolerance homolog2 |