PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020409-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 295aa    MW: 32159 Da    PI: 8.4156
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020409-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1123.1e-3550107359
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                             v+Y+eClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+ee
  SMil_00020409-RA_Salv  50 VVTYRECLKNHAASLGGHAVDGCGEFMPSPASNpADPTSLKCAACGCHRNFHRREPEE 107
                            589*****************************99********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2951105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-3152104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2353103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.55953104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.18E-19177248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28179249IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-25187244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MELSNSAVKT PDAESETPTR IQPAKPPPPS SNGVLKRHAP LHLHHGHPVV VTYRECLKNH  60
AASLGGHAVD GCGEFMPSPA SNPADPTSLK CAACGCHRNF HRREPEEPPP PPLPALEYRP  120
HHRHHPPPPP PPRLNSASPD NSPSPPPISS SFYPSAPHML LALSHGLSDG GALVNASSPP  180
LMSSGSRKRY RTKFTQNQKE KMLEFAERVG WKMQRKDENL INEFCSEAGL ERGVLKVWMH  240
NNKNTLAKKD HQSNTAAAAA AAEESDSKEN VQLQELRHHH HDNNTILGTN GSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.11e-118zinc-finger homeodomain protein 9
SwissprotQ9LXG08e-71ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G9HG831e-114A0A2G9HG83_9LAMI; Uncharacterized protein
STRINGXP_009620291.12e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-60homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]