PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00020406-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GeBP

Protein Properties

Length: 1175aa MW: 134788 Da PI: 7.6134

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020406-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.7	1.1e-13	794	838	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++s e+l+ +F ++++d+ keLg +++Kr+CR+yGIkRWP k SMil_00020406-RA_Salv 794 SLSYEVLKPHFGKKLQDVEKELGCKRSTIKRTCRKYGIKRWPNKK 838 6899**************************************987 PP
2	DUF573	96.2	3.3e-30	1008	1108	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 lfq lw++eDei lLqG++d+++++ + + ++d++afy++++++ ++++ ++qlv+K+rrLKkK+++ +k +gk+ f++ SMil_00020406-RA_Salv 1008 LFQHLWTDEDEIELLQGFLDYTTQRCSphnssQHHHDTTAFYNQIRSKFQLNFYQNQLVKKLRRLKKKYRNVISKFGTGKKYMFKS 1093 69******************99987776544556********************************************** PP DUF573 83 ehdqkifelskkiWg 97 +h+q +fe+ +kiWg SMil_00020406-RA_Salv 1094 PHEQATFEITSKIWG 1108 ************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.036	777	864	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-12	795	838	IPR003035	RWP-RK domain
Pfam	PF04504	6.6E-28	1009	1108	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 1175 aa Download sequence Send to blast
MDWAILRGRE GCYEQYSSLS EFIHDLDEEA DLAHEISVWG CVLYEKQQQQ QQILTLMLNF 60 AAESCYMDRH YMMQFWGVVK EESSHHYLSS SHHPFCFKKL MKGICWYRKL CRDHVYVVDV 120 DDEKLGGVLG RAYRNKHPES TPDLRLYSTY EFPMRDDAAG CGFRSYMALP LFDSIPMNTM 180 QPEREMREIL ELAVATVPQL YLALVWVPCN KPCVNINTNL CCMELASFIT SKNKVVNSYH 240 NFYGGVYQYL DACGFHNLLI DVMSCHSNLC DHVSIAKNPL AHYARRARMS NPFVISHHSN 300 RNHMYIIQFF LQPKPKFREV AYGENPLVLL LGIVEMNLKN SKYLSWGQNV EKSEMPKLLD 360 GLKETNSYKQ KISESNFTTY LKTVDLRFLR PSSADGGEGW VFCLLAAERL LVRTRMREKI 420 ENFMKNVAIK HWGEGYWLVQ FWAPKMVENR CYLETSDQPY SVGCLAKGLA SFRKKCTTHY 480 YFVDEQAVEE ELGPPGRVFR SKHLEITPDL FHYATEEFPI RNYAMHCCSH RGYFVLPIFD 540 DEYNHKCVGV LEFLGFHYHQ LEDIKEELKD AKLCSIHTDL HPSFLENELL VNSINCRREA 600 LSEVNNALER ICDSIPQLHM ANMKFIVFTC NPKKELLGCS HTGELPYVAE FFLYPGPATY 660 EYLRFFLNFL LKMMKQELKS FKMACGKQLG EELVVEVIEF SDANKLDSSD SEHTDVFPIK 720 FKSVQYSQHS EEQHTEEHNV ADSDSKRKEK GKRKTEEPSI TASNSNRKEK GKQKREVASD 780 AKTRDKGERK TGLSLSYEVL KPHFGKKLQD VEKELGCKRS TIKRTCRKYG IKRWPNKKEH 840 IKNLSLFERG SGSESTNTES THPLIVEKET EKVIIKVKDK EDTIKFELCL SLGVALSKES 900 DNNGQDFFGA PSSGLYLTPR GALMLCCSKF ISFSSALCPN GNLTPLTTTI PPPPPSSPSI 960 VPPLSPRFVS AAQVTIAVPG LPDPHHQLQI QPEIAKKPPP PPDELGDLFQ HLWTDEDEIE 1020 LLQGFLDYTT QRCSPHNSSQ HHHDTTAFYN QIRSKFQLNF YQNQLVKKLR RLKKKYRNVI 1080 SKFGTGKKYM FKSPHEQATF EITSKIWGNA ATYRAPPVSI DEDEDGINNP NFNNFVDCQS 1140 PNPNGIDKNA KTPRSRKRNH AGATAEASSS AEAIG

Sequence ? help Back to Top

Protein Sequence Length: 1175 aa Download sequence Send to blast

MDWAILRGRE GCYEQYSSLS EFIHDLDEEA DLAHEISVWG CVLYEKQQQQ QQILTLMLNF  60
AAESCYMDRH YMMQFWGVVK EESSHHYLSS SHHPFCFKKL MKGICWYRKL CRDHVYVVDV  120
DDEKLGGVLG RAYRNKHPES TPDLRLYSTY EFPMRDDAAG CGFRSYMALP LFDSIPMNTM  180
QPEREMREIL ELAVATVPQL YLALVWVPCN KPCVNINTNL CCMELASFIT SKNKVVNSYH  240
NFYGGVYQYL DACGFHNLLI DVMSCHSNLC DHVSIAKNPL AHYARRARMS NPFVISHHSN  300
RNHMYIIQFF LQPKPKFREV AYGENPLVLL LGIVEMNLKN SKYLSWGQNV EKSEMPKLLD  360
GLKETNSYKQ KISESNFTTY LKTVDLRFLR PSSADGGEGW VFCLLAAERL LVRTRMREKI  420
ENFMKNVAIK HWGEGYWLVQ FWAPKMVENR CYLETSDQPY SVGCLAKGLA SFRKKCTTHY  480
YFVDEQAVEE ELGPPGRVFR SKHLEITPDL FHYATEEFPI RNYAMHCCSH RGYFVLPIFD  540
DEYNHKCVGV LEFLGFHYHQ LEDIKEELKD AKLCSIHTDL HPSFLENELL VNSINCRREA  600
LSEVNNALER ICDSIPQLHM ANMKFIVFTC NPKKELLGCS HTGELPYVAE FFLYPGPATY  660
EYLRFFLNFL LKMMKQELKS FKMACGKQLG EELVVEVIEF SDANKLDSSD SEHTDVFPIK  720
FKSVQYSQHS EEQHTEEHNV ADSDSKRKEK GKRKTEEPSI TASNSNRKEK GKQKREVASD  780
AKTRDKGERK TGLSLSYEVL KPHFGKKLQD VEKELGCKRS TIKRTCRKYG IKRWPNKKEH  840
IKNLSLFERG SGSESTNTES THPLIVEKET EKVIIKVKDK EDTIKFELCL SLGVALSKES  900
DNNGQDFFGA PSSGLYLTPR GALMLCCSKF ISFSSALCPN GNLTPLTTTI PPPPPSSPSI  960
VPPLSPRFVS AAQVTIAVPG LPDPHHQLQI QPEIAKKPPP PPDELGDLFQ HLWTDEDEIE  1020
LLQGFLDYTT QRCSPHNSSQ HHHDTTAFYN QIRSKFQLNF YQNQLVKKLR RLKKKYRNVI  1080
SKFGTGKKYM FKSPHEQATF EITSKIWGNA ATYRAPPVSI DEDEDGINNP NFNNFVDCQS  1140
PNPNGIDKNA KTPRSRKRNH AGATAEASSS AEAIG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8ZBT5	0.0	A0A4D8ZBT5_SALSN; S-phase kinase-associated protein 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15694	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	5e-32	DNA-binding storekeeper protein-related transcriptional regulator