PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020310-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 154aa    MW: 17043.1 Da    PI: 7.7301
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020310-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.21.7e-132583563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                           ++ +r+q+NRe+ArrsR RK++ ++ L   +++L +eN +  + +   ++++ ++++e+
  SMil_00020310-RA_Salv 25 RKRKRMQSNRESARRSRMRKQKHLDDLMAQAAQLRKENAQILSSVGATTQHYVNVEAEN 83
                           6789***************************************9999999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-182185IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-102272No hitNo description
PROSITE profilePS5021710.532386IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-112577No hitNo description
PfamPF001701.5E-102580IPR004827Basic-leucine zipper domain
CDDcd147028.79E-212676No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MATSSGTTSS GSPPVQNWEG AMDQRKRKRM QSNRESARRS RMRKQKHLDD LMAQAAQLRK  60
ENAQILSSVG ATTQHYVNVE AENSVLRAQM MELTHRLGSL NEILSYINSN SAAVGAGGCM  120
FESEEFQQVG FGDGGAWNSM GLSHHPIMAE MFDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12445RKRKRMQSNRESARRSRMRKQK
23744RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083621.14e-72bZIP transcription factor 44
SwissprotC0Z2L51e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A4D9BCV77e-69A0A4D9BCV7_SALSN; Uncharacterized protein
STRINGMigut.C00766.1.p2e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-46basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]