PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020186-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 417aa    MW: 46630.3 Da    PI: 6.6059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020186-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019341363123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp C+++F++   L  H r+H
  SMil_00020186-RA_Salv 341 HVCPFCDRVFKNGQALGGHKRSH 363
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0181025IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9726592IPR007087Zinc finger, C2H2
SMARTSM003550.396587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
PfamPF139127.4E-66789IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889264291IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-8264286No hitNo description
SMARTSM003554.2264286IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-8264288IPR007087Zinc finger, C2H2
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-8336363No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4336363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141341363IPR007087Zinc finger, C2H2
SMARTSM003550.015341363IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-8341363IPR007087Zinc finger, C2H2
PROSITE patternPS000280343363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAFRVQAVQK KFPCGKSLGG HMRSHVVANS AEFEDLSEQF LNESGNGYVL RENPKKTWRA  60
AREEKVCKQC GKGFQSMKAL CGHMACHSDK ERGAKDDHSY SWTTENHKLL FDTHSDTEEV  120
VRTRSRRCKK VNYNGSSSVS EIDGQEHEID EMAVCLMMLS RDSGGVMNSV VESSDNNSVV  180
VETKSSSPEV KMEDSDSDSG YFLDECAKGE SEVSVDWFRR SGGFGNAYDD DDDDDDDDDG  240
ESRKRKSWNE SVKNGGEAHK KSKYECFNCN KSFKSYQALG GHRPCHKRSN AYGECGENSP  300
DAAAYYRSSS AKFVESSSKR KESSASEKKS SKTKKNNNKP HVCPFCDRVF KNGQALGGHK  360
RSHFLTGHDE SSSRSLVEKP DDDIHDLLDL NLPARRLMTN ISLGNGLQEQ YDLCLLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075585.11e-133uncharacterized protein LOC105160026
TrEMBLA0A4D9BP641e-160A0A4D9BP64_SALSN; Uncharacterized protein
STRINGMigut.L01205.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-40C2H2-like zinc finger protein