PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020154-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 336aa MW: 37888.4 Da PI: 4.2981

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020154-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.1	6.2e-10	57	124	2	69
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 Wt +e l L++ + +e++ +++ ++W+++ +++ + ++r+ +qCk kw+ + + y++ k+ge SMil_00020154-RA_Salv 57 WTVEESLILVNEISAIESEWGATLPSFQKWQQIVENCNALDVNRNLNQCKRKWDAMLTAYRRAKQGEP 124 ****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-9	56	138	No hit	No description
PROSITE profile	PS50090	7.248	57	113	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-4	57	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAELELCGAQ AWVSMLLYLA VMEVVGWASS PVTPRILRSY LCPSSYDRTR SKAAPDWTVE 60 ESLILVNEIS AIESEWGATL PSFQKWQQIV ENCNALDVNR NLNQCKRKWD AMLTAYRRAK 120 QGEPPDRSFP AELYAAVDQC VSTNGKRNDG GGEADEEEDG DATVVEEEEE QVVMETDPDS 180 DPEALGQLTK LLFETGSKKQ RCRMKRQKRR LETQNPWGYF TSTKKPHEES SSKQEEVKNT 240 NNVVESSPEE ISTELKEQTE SEEQTMAMML WENALQINAI LEGNLADDVD YKLAGLKNAE 300 AVQIDFTRRQ GDKLIDCLGN ISTTLNQLCD LVQKCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	205	RCRMKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022874386.1	1e-107	trihelix transcription factor ASR3
TrEMBL	A0A4D8ZR27	1e-170	A0A4D8ZR27_SALSN; Uncharacterized protein
STRING	Migut.E01408.1.p	1e-105	(Erythranthe guttata)
STRING	Migut.E01420.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8360	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	3e-30	sequence-specific DNA binding transcription factors