PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020150-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 504aa MW: 55261.1 Da PI: 7.7061

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020150-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	311	333	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg++F +++L++H + H SMil_00020150-RA_Salv 311 TCHKCGEHFAKWETLESHHLSkH 333 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.162	310	338	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	312	333	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.75E-6	410	503	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MKSTPNLKSN NRDRIYVVRS LRPTSTGVLR VLPLLDSTHL RCPSLVKRVT PALARPALRS 60 SCAAVLRCCA AQLCCAAQLC CAAQLCCAAL VCAALVWLRS AALFVVHPTL GVERDTVEKI 120 RAGVFRHDHQ RPVHPLYKKE EDERDADDSL VFTKEVPALQ IRAVGCAQSE DEEAAELNPD 180 KKIGQIGLFE VDCEFERCDS RQQTAPRAAP QLQPEIHRSS EFLNPIAHEV ILSNTTCELK 240 ITGFSGAAAA GESGGGSTYV GTLRPGTPGP GGHPTMHYFN PSFRNSTATP PRKEGLPPQK 300 RPSFEKDGGV TCHKCGEHFA KWETLESHHL SKHAEDPSSI RGLQGEREGQ GQQAPQEAPS 360 LPSRWERALE VPRNHASLLP RPKWLLQPLP LGEMQRVLYH QRGILDQEGD QRGVGVFTTS 420 TSGRAFESIE MQDGEEDPCV RKALIVCRVI AGRVHRPLEN IGDIAGQTGF DSLAGKVGLY 480 SNIEELYLLN HKALLPCFVV ICKT

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MKSTPNLKSN NRDRIYVVRS LRPTSTGVLR VLPLLDSTHL RCPSLVKRVT PALARPALRS  60
SCAAVLRCCA AQLCCAAQLC CAAQLCCAAL VCAALVWLRS AALFVVHPTL GVERDTVEKI  120
RAGVFRHDHQ RPVHPLYKKE EDERDADDSL VFTKEVPALQ IRAVGCAQSE DEEAAELNPD  180
KKIGQIGLFE VDCEFERCDS RQQTAPRAAP QLQPEIHRSS EFLNPIAHEV ILSNTTCELK  240
ITGFSGAAAA GESGGGSTYV GTLRPGTPGP GGHPTMHYFN PSFRNSTATP PRKEGLPPQK  300
RPSFEKDGGV TCHKCGEHFA KWETLESHHL SKHAEDPSSI RGLQGEREGQ GQQAPQEAPS  360
LPSRWERALE VPRNHASLLP RPKWLLQPLP LGEMQRVLYH QRGILDQEGD QRGVGVFTTS  420
TSGRAFESIE MQDGEEDPCV RKALIVCRVI AGRVHRPLEN IGDIAGQTGF DSLAGKVGLY  480
SNIEELYLLN HKALLPCFVV ICKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267824.1	2e-89	PREDICTED: uncharacterized protein LOC104604941
Refseq	XP_010267825.1	2e-89	PREDICTED: uncharacterized protein LOC104604941
TrEMBL	A0A4D8Z2V7	9e-94	A0A4D8Z2V7_SALSN; Uncharacterized protein
STRING	XP_010267823.1	9e-89	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	8e-34	C2H2 family protein