PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020000-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 91aa    MW: 10514.8 Da    PI: 9.3344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020000-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-0819591454
                           HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           d+iN+  ++L++llP+  + +s K s   +L+++++YI+sL
  SMil_00020000-RA_Salv 19 DQINELVSKLQQLLPEMHNRRSDKKSATKVLQETCNYIRSL 59
                           79**************558999999999***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-9480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.033559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-101978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-61959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSRQ SGSSRITDDQ INELVSKLQQ LLPEMHNRRS DKKSATKVLQ ETCNYIRSLH  60
REVDDLSERL SELLENADTT QAALIRSLLM Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743RRSDKKS
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575561e-153KP257556.1 Salvia miltiorrhiza clone 124 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736077.16e-48transcription factor PRE3-like
SwissprotF4JCN94e-39PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0H3Y7P34e-57A0A0H3Y7P3_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D01842.1.p1e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-25activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]