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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019543-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35909.2 Da PI: 6.7987 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 112.4 | 5e-35 | 21 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l pG+rF Ptd el+ +L+ k+++ + +i++v++y+++P+ L + + +++ewyfF++r++k+++g r+ r++ g+W+at SMil_00019543-RA_Salv 21 LLPGYRFVPTDYELL-IHLHYKINHGVALT-PHIRDVRLYDSHPQALTeTYPAVGDNEWYFFTPRNRKHPKGFRPDRVAGGGFWRATA 106 579************.89****99988555.67**************8445556999******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+v++ +g+++g k+tLv+++g ++++ekt+W+mhey++ SMil_00019543-RA_Salv 107 TVKKVKH-EGRVIGQKQTLVYHTGINKQSEKTSWMMHEYTA 146 *******.999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-44 | 17 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.318 | 21 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-19 | 23 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MMKECGSSSS SSSSSSIGDH LLPGYRFVPT DYELLIHLHY KINHGVALTP HIRDVRLYDS 60 HPQALTETYP AVGDNEWYFF TPRNRKHPKG FRPDRVAGGG FWRATATVKK VKHEGRVIGQ 120 KQTLVYHTGI NKQSEKTSWM MHEYTAHRDH PTAITRANRA TLDEWVLCRV YEKTTKVKGM 180 DRQEDVVETQ IHDQQFANSM IHAWGQINQQ DFPSHLLLPA QQFNNVNIGG DAAAAAAPNM 240 HEQDLFSLIN GSEAMQGTPM SPQDYVQRVD DHNISDVDVN AGAGVEQLCN GNNAVVQRNH 300 EDEMKEYMRM LGFPPIVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-35 | 21 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-35 | 21 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-35 | 21 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-35 | 21 | 175 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 21 | 175 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-35 | 21 | 175 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-35 | 21 | 175 | 17 | 167 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 2e-37 | NAC family protein |