PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00019543-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 318aa MW: 35909.2 Da PI: 6.7987

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019543-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.4	5e-35	21	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l pG+rF Ptd el+ +L+ k+++ + +i++v++y+++P+ L + + +++ewyfF++r++k+++g r+ r++ g+W+at SMil_00019543-RA_Salv 21 LLPGYRFVPTDYELL-IHLHYKINHGVALT-PHIRDVRLYDSHPQALTeTYPAVGDNEWYFFTPRNRKHPKGFRPDRVAGGGFWRATA 106 579**********.8999988555.67**********8445556999*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+v++ +g+++g k+tLv+++g ++++ekt+W+mhey++ SMil_00019543-RA_Salv 107 TVKKVKH-EGRVIGQKQTLVYHTGINKQSEKTSWMMHEYTA 146 ***.999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-44	17	173	IPR003441	NAC domain
PROSITE profile	PS51005	42.318	21	173	IPR003441	NAC domain
Pfam	PF02365	3.4E-19	23	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MMKECGSSSS SSSSSSIGDH LLPGYRFVPT DYELLIHLHY KINHGVALTP HIRDVRLYDS 60 HPQALTETYP AVGDNEWYFF TPRNRKHPKG FRPDRVAGGG FWRATATVKK VKHEGRVIGQ 120 KQTLVYHTGI NKQSEKTSWM MHEYTAHRDH PTAITRANRA TLDEWVLCRV YEKTTKVKGM 180 DRQEDVVETQ IHDQQFANSM IHAWGQINQQ DFPSHLLLPA QQFNNVNIGG DAAAAAAPNM 240 HEQDLFSLIN GSEAMQGTPM SPQDYVQRVD DHNISDVDVN AGAGVEQLCN GNNAVVQRNH 300 EDEMKEYMRM LGFPPIVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	21	175	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	21	175	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	21	175	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	21	175	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	21	175	20	170	NAC domain-containing protein 19
3swm_B	2e-35	21	175	20	170	NAC domain-containing protein 19
3swm_C	2e-35	21	175	20	170	NAC domain-containing protein 19
3swm_D	2e-35	21	175	20	170	NAC domain-containing protein 19
3swp_A	2e-35	21	175	20	170	NAC domain-containing protein 19
3swp_B	2e-35	21	175	20	170	NAC domain-containing protein 19
3swp_C	2e-35	21	175	20	170	NAC domain-containing protein 19
3swp_D	2e-35	21	175	20	170	NAC domain-containing protein 19
4dul_A	2e-35	21	175	17	167	NAC domain-containing protein 19
4dul_B	2e-35	21	175	17	167	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA814	13	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	2e-37	NAC family protein