PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019324-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 410aa    MW: 44458.7 Da    PI: 10.5525
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019324-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.14.7e-3284157279
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79 
                             g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+  +++ +       ++
  SMil_00019324-RA_Salv  84 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIAELPPMNTPFPDTP----KQ 157
                            689***********************************************************9955544222....11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3485166IPR005333Transcription factor, TCP
PROSITE profilePS5136931.53186144IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEVDDQIQCK FPRISNGNGR LDATKLGHAQ KMDDQYPDEE EEGDNKRQNA TGGGVRNGGV  60
DLSGGVGRFY GWPSSRIVRV SRASGGKDRH SKVLTSKGLR DRRVRLSVNT AIQFYDLQDR  120
LGYDQPSKAV EWLLKAAASS IAELPPMNTP FPDTPKQLSD EKRSAPPAAI SSASTPLRSI  180
WTGAAIRITP GSSRHWSSTP MDYFTSGLLG PPSTTRPAQM HLPVNPYTSV ASPLFSVAAD  240
HHPELQHFSF VPDHLVPVVN AAAAAAAAAG GNNNNHNSSS SGNGNGNGGG IEYNLNFTIS  300
SSANSSGLGG FNRGTLQSNS SSPSLLPHLQ RYADGSARFL PRYPPPVPLR LRLPRPAAML  360
RRRPCQQRPA LRPERERQEL TSSQPVRLLN SFNSRMNPVT FVATFFSEVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2291145155Putative transcription factor PCF6
5zkt_B2e-2291145155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.11e-80transcription factor TCP2-like
RefseqXP_011096600.11e-80transcription factor TCP2-like
RefseqXP_020554008.11e-80transcription factor TCP2-like
TrEMBLA0A4D9B5Y71e-80A0A4D9B5Y7_SALSN; Uncharacterized protein
STRINGMigut.M00891.1.p6e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2