PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019310-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 315aa    MW: 32756.8 Da    PI: 4.968
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019310-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.74.6e-12219272457
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                             +++rr++kNRe+A rsR+RK+a++ e e  v +Le+e  +L  e  el+ e +
  SMil_00019310-RA_Salv 219 QQKQRRMIKNRESAARSRERKQAYTVEMEAMVTSLEEEHARLLREEAELNRERY 272
                            689*************************************99888777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.8E-13213271No hitNo description
SMARTSM003382.7E-11216280IPR004827Basic-leucine zipper domain
PfamPF001705.2E-10218272IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.128218270IPR004827Basic-leucine zipper domain
CDDcd147075.30E-19220267No hitNo description
SuperFamilySSF579592.31E-9220271No hitNo description
PROSITE patternPS000360223238IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
LNFMLMASSR VIASRSPPNS DLPRDSPTSS INIHSDQAAR GFGSMNMDEI FRNIYPDSTS  60
FDNGAAGGEA ASGGGLSSVD GGDGGVRNGG GSKTVEEVWR DIVTGGGGGG GVSGGETAMT  120
LEDFLAKAGA VNEEDVRVPA VVTMPPPPPA VGGFGMEGVM MSPAPGVPAV QFAAAGCVQN  180
VIGVEFGSGM AAVSGSVGGG GRGKRRVAVD EVPLDKATQQ KQRRMIKNRE SAARSRERKQ  240
AYTVEMEAMV TSLEEEHARL LREEAELNRE RYKQCLAVIV DDGKFGSNLV TEREMGNLLQ  300
LVIIAHTLAG GTSGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00648PBMTransfer from LOC_Os05g36160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552830.11e-128G-box-binding factor 4-like
TrEMBLA0A4D8ZMD71e-123A0A4D8ZMD7_SALSN; ABA responsive element binding factor
STRINGVIT_12s0055g00420.t013e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.13e-18bZIP family protein