PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019286-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 487aa    MW: 53096.8 Da    PI: 5.7703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019286-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12288335355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+h   Er+RR++i ++f+ L +l+P+      +K++K+++L +++eY+++L+
  SMil_00019286-RA_Salv 288 RNHVLSERKRREKISERFAILGSLVPSG-----GKVDKVSVLDHTIEYLRELE 335
                            579999********************98.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-10847IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.005285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10288335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-12288339No hitNo description
Gene3DG3DSA:4.10.280.102.5E-17289352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-15291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDSRCCYQSA SLQTVVCFPH WGGVVELGTT ELVPEDRSLI EHIKTSFLES SSDAVINPSH  60
ELVYQVLNHS DIPENNLDEV EVYSPDTSSD EFADNVLIEG SSLADGADGE ASQLQSWQCK  120
DDADPVSNGT NNSTSSSDCV SQIHGNLEVK IQESDGKKAG DANCVPVSQE CNQQKSPSFN  180
GGGGGSGGGG GGGVGDVHYH SVISSLLKSS HQLILGPYRN GKTESSFINW KDRKLSHRLP  240
QSASPQRLLK KVLFSVARMH ENAQIESAKH KDRCDDQSGQ QEGEEVDRNH VLSERKRREK  300
ISERFAILGS LVPSGGKVDK VSVLDHTIEY LRELEKKVED LEAYKEATER ESTTQSKAHD  360
AIERTSDNYG QSKPGSFTKL LGSKRRASDM EKTAPENKRT RSSSSTDSIT ISITDKDVLV  420
EMRCSWRQCV LIQVMEALTQ LNLDSQSVQS SNTDGILSLS INAKSKGVKG ASAGAIKQAL  480
QRIIKKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERKRRE
2294299RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574840.0KP257484.1 Salvia miltiorrhiza clone 51 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072770.11e-175transcription factor EGL1-like
TrEMBLA0A0H3YBS80.0A0A0H3YBS8_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.E01090.1.p1e-143(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-73bHLH family protein