PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019281-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 335aa    MW: 36581.8 Da    PI: 5.9312
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019281-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.9e-3449103155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  SMil_00019281-RA_Salv  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-3248104IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.4E-951102IPR001005SANT/Myb domain
PfamPF143791.3E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYQPTGVPSS SLVHSNPIVR SQPLDCVDST MDPISGSNSG SNNQSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK  120
ESGDMLSGLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ  180
RISGVLSEAP GSGASAPETD DVCPESDNKT DPATPAPTSE SPFADKPANE RASVKSFSLD  240
ESMSSHHEPL TPDSGCHASS PVESPDGRPM KKKRGSSDVA FTKEEMVLSH SILESSLNSP  300
YQQPHPLFLT SEQFDHSSEL PIGDENQLEK LSGIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-2449106259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0924281e-54KR092428.1 Tectona grandis MYB transcription factor 1 (MYB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554068.10.0uncharacterized protein LOC105175200
SwissprotQ9SJW01e-130PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A4D9C5S50.0A0A4D9C5S5_SALSN; Two-component response regulator ARR-B family
STRINGVIT_00s0475g00040.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-92G2-like family protein