PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018938-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 28044.1 Da    PI: 7.8037
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018938-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.7e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien+++rqvtfskRr g++KK +ELSvLCda++ +i+fs++gkl ey++
  SMil_00018938-RA_Salv  9 KRIENNTRRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCT 59
                           79***********************************************96 PP
2K-box52.61.9e-18951741795
                  K-box  17 lqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                              +e++++++e++nL+ + + +++G+dL+   ++eL qLe+qLe sl+k+R++K +l+ eq+e+l++ e  +++en+++ 
  SMil_00018938-RA_Salv  95 VIKEVSRMRSETHNLElSLIQRYKGDDLSGVHYEELLQLEHQLELSLNKVRARKFQLIQEQVENLKRTEVLMEKENQEMY 174
                            5589************98899*******************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-31279IPR002100Transcription factor, MADS-box
CDDcd002651.78E-41276No hitNo description
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.42292185IPR002487Transcription factor, K-box
PfamPF014866.9E-1794176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKIEVKR IENNTRRQVT FSKRRSGLMK KTHELSVLCD AQIGLIVFST KGKLTEYCTP  60
PHSMKQMIDR YAKAKGISIP EHGSRAGATA YDDQVIKEVS RMRSETHNLE LSLIQRYKGD  120
DLSGVHYEEL LQLEHQLELS LNKVRARKFQ LIQEQVENLK RTEVLMEKEN QEMYHWLMSN  180
QIQKEAEIEN EQQAMTELKL VEQQPLMNQF PFFGDDLHLG TLPFHTHTYR LQPTHPNLQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16159159MEF2C
5f28_B2e-16159159MEF2C
5f28_C2e-16159159MEF2C
5f28_D2e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843283.11e-138PREDICTED: MADS-box protein defh21
SwissprotQ8RVL41e-127DEF21_ANTMA; MADS-box protein defh21
TrEMBLA0A4D8Y7941e-140A0A4D8Y794_SALSN; MADS-box transcription factor, plant
STRINGMigut.C01064.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-53MIKC_MADS family protein