PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018706-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 364aa MW: 41283.7 Da PI: 6.1845

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018706-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.7e-11	76	108	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k+ rr+++NReAAr+sR+RKka++++Le+ SMil_00018706-RA_Salv 76 PDDKVLRRLAQNREAARKSRLRKKAYVQQLENS 108 689****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.9E-8	70	123	No hit	No description
SMART	SM00338	8.4E-5	75	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.025	77	121	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-8	78	107	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-7	79	120	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.3E-28	166	241	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MNSTTTQFVP SRRMGLYEPV HQMSMWGDFR NTLLDSSPPP ELMLEVNANL DNQSEDTTSQ 60 GTFAASHRND QEASKPDDKV LRRLAQNREA ARKSRLRKKA YVQQLENSKL RLIQLEQELN 120 RVRQQQGLCV GGGIDTSQLA YTGNSNPGIS AFELEYGHWV EEQNRQISDL KNALHSDMGD 180 TELQIFVDGG MQHYFELFSM KVMAARADVF YIMSGMWKTS AERFFLWIGG FRPSELVKVL 240 SPHLDALSEQ QRLDIVNLTQ SCQQAEDALS QGMEKLQFIL AQAIADGLLQ EGNYLPQIGA 300 AMNKLDDLVR FVVQADHLRQ ETLQQLSRIL TTRQAARGLL ALGEYLQRLR ALSSCWSSRP 360 REQA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MNSTTTQFVP SRRMGLYEPV HQMSMWGDFR NTLLDSSPPP ELMLEVNANL DNQSEDTTSQ  60
GTFAASHRND QEASKPDDKV LRRLAQNREA ARKSRLRKKA YVQQLENSKL RLIQLEQELN  120
RVRQQQGLCV GGGIDTSQLA YTGNSNPGIS AFELEYGHWV EEQNRQISDL KNALHSDMGD  180
TELQIFVDGG MQHYFELFSM KVMAARADVF YIMSGMWKTS AERFFLWIGG FRPSELVKVL  240
SPHLDALSEQ QRLDIVNLTQ SCQQAEDALS QGMEKLQFIL AQAIADGLLQ EGNYLPQIGA  300
AMNKLDDLVR FVVQADHLRQ ETLQQLSRIL TTRQAARGLL ALGEYLQRLR ALSSCWSSRP  360
REQA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090575.1	0.0	transcription factor TGA1
Refseq	XP_011090576.1	0.0	transcription factor TGA1
Swissprot	Q39237	1e-172	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A4D8YK34	0.0	A0A4D8YK34_SALSN; Transcription factor TGA
STRING	Migut.H02410.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-175	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]