PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018448-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 473aa    MW: 52937.4 Da    PI: 6.5117
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018448-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-11190246155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  SMil_00018448-RA_Salv 190 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 246
                            57*******************4444.2455535555.779999**************98 PP
2AP2476.4e-15289340155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SMil_00018448-RA_Salv 289 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 340
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-14190256IPR016177DNA-binding domain
CDDcd000181.01E-17190256No hitNo description
PfamPF008476.9E-9190246IPR001471AP2/ERF domain
PROSITE profilePS5103216.726191254IPR001471AP2/ERF domain
SMARTSM003803.9E-21191260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-11191255IPR001471AP2/ERF domain
PRINTSPR003671.3E-6192203IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-18289349IPR016177DNA-binding domain
PfamPF008472.2E-10289340IPR001471AP2/ERF domain
CDDcd000183.87E-25289350No hitNo description
SMARTSM003801.1E-33290354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-18290349IPR001471AP2/ERF domain
PROSITE profilePS5103219.282290348IPR001471AP2/ERF domain
PRINTSPR003671.3E-6330350IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDAMNNWLGF SLSSNQDYHP QNSSVSELGF HSDHEQMSTH ECFAIDLTPP SIFEAFNTNP  60
PSQDWNVNDD SRINSFSCNQ NQETPKLENF LEVGGQSFAV DHHSMIDGGS SHNMGLSMIK  120
NWLRSHATPA PAADDKPVDE APPEPSRGHT LSLSMSTSSQ SSDNKLCGGG GGAVESVPRK  180
SIETFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE EKAARAYDLA  240
ALKYWGTTTT TNLPISNYET ELEEMKHMTR QEYVASLRRK STGFSRGASI YRGVTRHHQH  300
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDVAAIKFRG LNAVTNFETS RYDVRGIMES  360
IKLPIPMGKR LKEAEKGDMR LQMHQGNNSF GLEQGSMYPY QRMWCKQEQD SDVGFNDEAL  420
LQASMLQLNN PNLNAAAAAC DGFGFEGVFG SSTDAYRSLY YQSQQLSSMW NAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084678.11e-179AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ8LSN21e-135BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A4D8ZMB30.0A0A4D8ZMB3_SALSN; AP2-like factor, ANT lineage
STRINGMigut.F01850.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-130AP2 family protein