![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
SMil_00018249-RA_Salv |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family |
MYB |
Protein Properties |
Length: 329aa MW: 37124.9 Da PI: 9.1313 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
SMil_00018249-RA_Salv | genome | NDCTCM | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Smi&pid=SMil_00018249-RA_Salv) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.6 | 8.9e-16 | 70 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +lv +v+++G ++W+ +a+ g++Rt+k+c++rw +yl
SMil_00018249-RA_Salv 70 KGPWTEQEDTQLVFYVNLFGDRRWDFVAKVSGLKRTGKSCRLRWVNYL 117
79********************************************97 PP
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2 | Myb_DNA-binding | 50.7 | 4.1e-16 | 123 | 168 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+ E+ l v++ ++G++ W++Iar+++ gRt++++k++w++++
SMil_00018249-RA_Salv 123 RGKMTPNEERLVVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 168
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
LQTTCMVLIP SSITFKSLIN LLNSNPLPHA EMPSIYTHII TPHTISILHP PTHTQRYQEK 60 MKMEKEEVRK GPWTEQEDTQ LVFYVNLFGD RRWDFVAKVS GLKRTGKSCR LRWVNYLHPG 120 LKRGKMTPNE ERLVVELQSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQESKKKKG 180 SSSSSSSSTT TSSSSSSSSS NSSSSSAPNS PRPGDSAPAK GKPAGAEGER SFYDTGGVGL 240 AATAASLVVE EGNKVYSMDD LWKEFEFPEE NCALTAQTVA SPIWDYCPND SLWCMSEEES 300 KMLMMQQQQQ QPVGDHHFQS FPFCNYMIG
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF059399 | 0.0 | KF059399.1 Salvia miltiorrhiza MYB-related transcription factor (MYB45) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]
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