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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017965-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 32038.4 Da PI: 6.7212 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.8 | 6.8e-56 | 22 | 151 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++yL +kv ++++ + ++i e+d++k+ePwdLpkk+k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgk SMil_00017965-RA_Salv 22 LPPGFRFHPTDEEIIMHYLLHKVLDRRFVA-KAIGEADLNKCEPWDLPKKAKMGEKEWFFFCQRDRKYPTGMRTNRATESGYWKATGK 108 79*************************999.89***************99999*********************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ ++ lvg+kktLvfykgrapkg kt+Wvmhe+rle SMil_00017965-RA_Salv 109 DKEIHRGtnSNCLVGMKKTLVFYKGRAPKGDKTNWVMHEFRLE 151 *****97444455***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-63 | 20 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.558 | 22 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEVGFAGPSM SKEEDDELVV ELPPGFRFHP TDEEIIMHYL LHKVLDRRFV AKAIGEADLN 60 KCEPWDLPKK AKMGEKEWFF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIHRGTNSNC 120 LVGMKKTLVF YKGRAPKGDK TNWVMHEFRL EGTFSTYNLS RPPKEEFVVC RVFHKNSGIR 180 RTPGVELSRL DPLVPMPPLT DYNDERVFWP QNALYLPKME HFSSVSQDTG LSTENVANHE 240 ITSKNMNMNT NAAAAFDDAE LQGLAFSPNI SDLDTLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-52 | 7 | 181 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-52 | 7 | 181 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-52 | 7 | 181 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-52 | 7 | 181 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-52 | 7 | 181 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-52 | 7 | 181 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078584.1 | 1e-115 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 5e-92 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | R4NFR5 | 2e-96 | R4NFR5_JATCU; NAC transcription factor 003 | ||||
STRING | XP_002525465.1 | 8e-97 | (Ricinus communis) | ||||
STRING | XP_010276452.1 | 1e-96 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 6e-94 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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