PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017938-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 500aa    MW: 55780.2 Da    PI: 4.9286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017938-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11171194427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            e C f++++G Ck+G +CkF+H+p
  SMil_00017938-RA_Salv 171 EDCAFYMKFGSCKFGLNCKFNHPP 194
                            89********************97 PP
2zf-CCCH27.55.3e-09217240326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            + +C++++ +G CkyG  Ck++Hg
  SMil_00017938-RA_Salv 217 QTECKYYLTSGGCKYGKDCKYSHG 240
                            679********************8 PP
3zf-CCCH36.86.4e-12263287327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C++++rtG CkyG +C+++H++
  SMil_00017938-RA_Salv 263 EKECPYYMRTGSCKYGLNCRYHHPE 287
                            679********************96 PP
4zf-CCCH34.82.8e-11429455127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+ff++tG Cky ++CkF+H++
  SMil_00017938-RA_Salv 429 PGEPECSFFLKTGDCKYRSNCKFHHPK 455
                            5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5165195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737167195IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4167194IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9171194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577214242IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4214241IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6217240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5220241IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915260288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6261287IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9263287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5266286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033428456IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4428455IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7430455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5433456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4434454IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAESPSSTSE KPPIEKVGLG FLVEDTPPSD PIKPEPEIVE IQQPEAPENA PGEGSDPPTA  60
VMEEVVGETA APDEETEFLK AIERDLCELT IQQAHIERLV CIDEEKGDHL GTQKDGKDSE  120
SGEYENEIDE GDEDKEGSVA INFGDGASKL GRFNQNNSRR KVNYPMRPDA EDCAFYMKFG  180
SCKFGLNCKF NHPPRRKNQN VKERTNHKEE NSERGGQTEC KYYLTSGGCK YGKDCKYSHG  240
SDRSSSSQMP EFNFLGLPIR IGEKECPYYM RTGSCKYGLN CRYHHPEPVT VGGDSTSGYG  300
NGGSFPPQFV SSSSPSSWSS PRAFNETSPF IPVMFPPSQG APTSNQDWNG YQWKSHMEYY  360
CSPLENCWKH LSCLICFLFI FDLVEAATYS ASEGLPTPPA FAMNNLPAEI NFPMRRQPDI  420
LVEEYPERPG EPECSFFLKT GDCKYRSNCK FHHPKSRMIS PSARIITATA FASTDQLVNM  480
ITHQTLPSCR PPLISHRLGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072925.11e-164zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLA0A4D9AEW30.0A0A4D9AEW3_SALSN; Uncharacterized protein
STRINGMigut.I00264.1.p1e-147(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-75C3H family protein