PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017579-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 230aa MW: 26380.4 Da PI: 11.1285 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.2 | 4.3e-29 | 150 | 200 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ SMil_00017579-RA_Salv 150 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQE 200 9*************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-14 | 147 | 206 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 148 | 205 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-21 | 150 | 202 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 151 | 200 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MELFPAQPDL SLRISPLNST TSSNWRRGEE EMDLGFWKRA LESRTSLPLS NPARVSDPLT 60 APNHHRILHP RPQLDEEVSL LKPIRGIPVY QNPPSFPFAA HHHQQQRHLE ASFASVNHLA 120 TASVAPYTSQ ALMRSRFLSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV 180 LELMDVKDLT LAHVKSHLQE MWMHLKMGLL GIHQMNSFST FRIHTSLKYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-15 | 151 | 200 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-15 | 151 | 200 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-15 | 151 | 200 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-15 | 151 | 200 | 3 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-15 | 151 | 200 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024461198.1 | 2e-79 | probable transcription factor KAN2 isoform X3 | ||||
Swissprot | Q9C616 | 7e-37 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A4D8YPP8 | 1e-102 | A0A4D8YPP8_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0001s02010.1 | 2e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 2e-39 | G2-like family protein |
Publications ? help Back to Top | |||
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