![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
SMil_00017546-RA_Salv |
Common Name | MYB80 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family |
MYB |
Protein Properties |
Length: 533aa MW: 57846 Da PI: 4.9616 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
SMil_00017546-RA_Salv | genome | NDCTCM | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Smi&pid=SMil_00017546-RA_Salv) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 46 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
SMil_00017546-RA_Salv 46 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 93
79******************************************9986 PP
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2 | Myb_DNA-binding | 51.2 | 3e-16 | 99 | 142 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++
SMil_00017546-RA_Salv 99 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 142
799*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway |
GO:0043068 | Biological Process | positive regulation of programmed cell death |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0045926 | Biological Process | negative regulation of growth |
GO:0048235 | Biological Process | pollen sperm cell differentiation |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 533 aa
Download sequence Send
to blast |
LLDVIEQMGR SSTAESEDGV LSADSPLSND GDNFGGSSNG GVVLKKGPWT SAEDAILVEY 60 VKKHGEGNWN AVQKHTGLAR CGKSCRLRWA NHLRPNLKKG AFTSEEERLI IELHAKMGNK 120 WARMAAHLPG RTDNEIKNYW NTRIKRRQRA GLPLYPSDLC LQSLPENQQL SSPRIYGGDK 180 ACNDILQNNG YRAPDIMFDS YNILTFAPEV PGIPGSVSMG NSFASPHSYG FVPQTIGVPD 240 RAREPDEPMS DYGSGGVNEA PTFNRTRTDS CVNKSFQSFG LCFPYDPDHT KKLLSSGVNQ 300 DTPFMSDVTF SASEHFADAQ KSELPSLQYQ ETGLGVWDPP PESFDSLVQS PLSGPLPSHC 360 PSPGSSGLLE DLIYEAKALG KLENQSSAWA TSSNVSHGEV TDGSAFRTCS TEFKGYIDPN 420 SPSGNSMGSL FNRYTPTTGR SLEDDVTMHH VKSEVFDPSW IVDGESKVDY SRPDAILGSC 480 WVEQSGPASK QKGSTTDSIA ALLGDTSASA STWGFTSCSW NNMPPVCQIS DIP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF059434 | 0.0 | KF059434.1 Salvia miltiorrhiza MYB-related transcription factor (MYB80) mRNA, complete cds. |