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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SMil_00017464-RA_Salv |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
BBR-BPC |
| Protein Properties |
Length: 297aa MW: 33625.2 Da PI: 9.5753 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00017464-RA_Salv | genome | NDCTCM | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 310.5 | 5.5e-95 | 1 | 297 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yye............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
md++g ++ r++ y++ ++ ++++ ++ +l+ + +erd++irer+ al+ekk a+ erd a +q d+a+ er++a
SMil_00017464-RA_Salv 1 MDESGRENrRHRMdYHKvpqwnvmpqyqiKEpNAFQ--MNAKLVMLCNERDDAIRERDRALTEKKLALDERDAAMKQLDAAIMERDDA 86
899999887788756669999999887773346777..999*********************************************** PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
l erdn+++al+++e + ++p ++ ++g+k ++++ + + +++++ + +alp+++ ++ea +kk + +++k++++
SMil_00017464-RA_Salv 87 LRERDNAIAALQFHESA---VNPLLSGGVRGSKRTNHHPN---SMQSEDCI-----HDHDALPVSHVPHEAPLSKKGTRAKTNKDAQT 163
*************9987...8899999******9998777...22223333.....34577887775555444443333333333333 PP
GAGA_bind 162 kkakkkkkksekskkkvkkesad.erskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
+ +++ kkvkk ++d +rskae++ +dl ++ ++ +Des++PvPvCsCtG++rqCYkWGnGGWqS+CCtt++S yPLP++
SMil_00017464-RA_Salv 164 RSGRSP--------KKVKKIGEDlNRSKAEWDAQDLsSMSQIMFDESSMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTSLSLYPLPQM 243
332333........446666666699**********88************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++r+aR++grKmS+++f++lL +Laa G dls pvDLk++WAkHGtn+++ti+
SMil_00017464-RA_Salv 244 PNKRHARMGGRKMSGSVFSRLLTRLAAAGQDLSIPVDLKEYWAKHGTNRYITIK 297
*****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MDESGRENRR HRMDYHKVPQ WNVMPQYQIK EPNAFQMNAK LVMLCNERDD AIRERDRALT 60
EKKLALDERD AAMKQLDAAI MERDDALRER DNAIAALQFH ESAVNPLLSG GVRGSKRTNH 120
HPNSMQSEDC IHDHDALPVS HVPHEAPLSK KGTRAKTNKD AQTRSGRSPK KVKKIGEDLN 180
RSKAEWDAQD LSSMSQIMFD ESSMPVPVCS CTGVPRQCYK WGNGGWQSSC CTTSLSLYPL 240
PQMPNKRHAR MGGRKMSGSV FSRLLTRLAA AGQDLSIPVD LKEYWAKHGT NRYITIK
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
