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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017439-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ARF | ||||||||
Protein Properties | Length: 670aa MW: 74347.5 Da PI: 6.2022 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.3 | 8.9e-11 | 2 | 51 | 46 | 99 |
EEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 46 WevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 W + l +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ SMil_00017439-RA_Salv 2 WLLLL--SGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLLLGIRRA 51 55556..88999**************************..7888889****997 PP | |||||||
2 | Auxin_resp | 118 | 7.6e-39 | 76 | 159 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t s F+v+YnPras+seFv++++k+++a++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wrs+k SMil_00017439-RA_Salv 76 AAHAAATDSCFTVFYNPRASPSEFVIPLSKYVQAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWSNSHWRSVK 159 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.589 | 1 | 52 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-15 | 2 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-8 | 3 | 51 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.76E-13 | 8 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 3.9E-34 | 76 | 159 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.03E-7 | 548 | 622 | No hit | No description |
PROSITE profile | PS51745 | 22.109 | 548 | 632 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MWLLLLSGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ATRPQTVMPS 60 SVLSSDSMHI GLLAAAAHAA ATDSCFTVFY NPRASPSEFV IPLSKYVQAV YHTRVSVGMR 120 FRMLFETEES SVRRYMGTIT GIGDLDPVRW SNSHWRSVKV GWDESTAGDK QPRVSLWEIE 180 PLTTFPMYPS LFPLRLKRPW YPGASSSQDL NHEHKLQVLC SSNGVTKHSS TPISVAGNEA 240 INGMAWLRGE VGSQGFNSLN FQSVGMIPLM QQRFDPIGSR NDLTEQYQAM MAGGLQNFGS 300 GELLKNQLMQ FQQPIHYLSS TGSHNPVAQL QHGPQSLVSP HMHPTQSQML PDNLQRPLEQ 360 QIDNQAEKRE QEHTYREAYF SQHDQLQQRP MFDIPSSSIS KSDFTTSNDK FSASVAHSTM 420 QNMLSSICPE GGGNFLSFLR LGEPIINEQS PQQSWKFTQS PANGCSSSKT CAPFSGKDAS 480 VQLESCSLDV QTHALFGANI DSSASVVGTV HSDVQSGPSG CQSPLYGCVQ DSFDVLQSTG 540 ELDRPNAHAF VKVYKTGAVG RTLDITQFNS YQELRQELGQ MFGVEGLLED PQRSGWQLVF 600 VDRENDVLLL GDDPWEAFVN NVWYIKILSP EDVLKLGKQE AESSSRSTND TMSTADEAQN 660 CVWTPISRMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-69 | 5 | 180 | 213 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX036739 | 0.0 | KX036739.1 Salvia miltiorrhiza auxin response factor ARF19 (ARF) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097995.1 | 0.0 | auxin response factor 8 isoform X4 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A191T8T8 | 0.0 | A0A191T8T8_SALMI; Auxin response factor | ||||
STRING | XP_009612885.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |