PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 298aa MW: 31689.6 Da PI: 10.4485

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017405-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky SMil_00017405-RA_Salv 95 PWTEEEHKLFLIGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 139 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.582	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	7.4E-17	90	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-16	91	142	IPR006447	Myb domain, plants
SMART	SM00717	3.4E-9	92	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	94	139	IPR009057	Homeodomain-like
Pfam	PF00249	6.8E-11	95	139	IPR001005	SANT/Myb domain
CDD	cd00167	6.24E-9	95	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSLSRESPAT AVSSGGEIML FGVRVKVDPM RKSVSMNNLS EYEPVSDAIN PEAAKEGGGA 60 AGYASADDAA PQPSGGSGSG SGSGSGSGER KRGTPWTEEE HKLFLIGLQK VGKGDWRGIS 120 RNYVKTRTPT QVASHAQKYF LRRSNLNRRR RRSSLFDITT DSVAAMPMEE ARNRQQIPAQ 180 PASAPPPMTS NVNAFSTMAF PMINGPVLLS MQGGNPLENS APCQNFLVNN SSAMFAHHRV 240 PVLSTPPSSA MAELKLNQRA PLEPSALSLR LSLSTGQNQP STRAISSYKN GDSIVSVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR780116	2e-75	KR780116.1 Rehmannia glutinosa MYB-related protein (MYB40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071772.1	1e-110	transcription factor MYB1R1
Swissprot	Q2V9B0	9e-70	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A4D8YFX1	1e-136	A0A4D8YFX1_SALSN; Uncharacterized protein
STRING	Migut.D01891.1.p	2e-97	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	6e-45	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]