PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017359-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 300aa    MW: 34135 Da    PI: 4.6348
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017359-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18112165356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++++q++ Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa++k
  SMil_00017359-RA_Salv 112 KKRRLSHDQVQFLEKSFEVENKLEPERKIQLAKEVGLQPRQVAIWFQNRRARYK 165
                            56689************************************************9 PP
2HD-ZIP_I/II124.83.8e-40111202192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls++qv++LE+sFe e+kLeperK +la+e+glqprqva+WFqnrRAR+ktk lEk+y+aLk++yd+l+++ ++L ke++++r
  SMil_00017359-RA_Salv 111 EKKRRLSHDQVQFLEKSFEVENKLEPERKIQLAKEVGLQPRQVAIWFQNRRARYKTKVLEKEYAALKASYDKLTSDYDALFKENDNMR 198
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            ++++
  SMil_00017359-RA_Salv 199 NQVN 202
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-18104167IPR009057Homeodomain-like
PROSITE profilePS5007117.427107167IPR001356Homeobox domain
SMARTSM003895.5E-18110171IPR001356Homeobox domain
PfamPF000466.4E-16112165IPR001356Homeobox domain
CDDcd000864.18E-17112167No hitNo description
Gene3DG3DSA:1.10.10.602.8E-18114173IPR009057Homeodomain-like
PRINTSPR000312.5E-5138147IPR000047Helix-turn-helix motif
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PRINTSPR000312.5E-5147163IPR000047Helix-turn-helix motif
PfamPF021833.4E-14167208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
SSVTSLNTPL SLSLSLFHCH STCCNSDFPY KNPVFFLQIK SMEGGGVYDD SRMPNHLLKS  60
ESSEVLDSLW VPNSSPSFQG SASMVSFEGE NINVKAENCN DEFDPCFQQP EKKRRLSHDQ  120
VQFLEKSFEV ENKLEPERKI QLAKEVGLQP RQVAIWFQNR RARYKTKVLE KEYAALKASY  180
DKLTSDYDAL FKENDNMRNQ VNLLTEKLLR KSPSAKKEEA ASSAVFDSES QSATLEPADS  240
SHVEASDFSQ DEDDTLSRSL MPPSCFPKLE IECYDDLQPN SCNLGFPVQD QVQGTWFWQY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-109homeobox-leucine zipper protein HAT5-like
TrEMBLA0A4D9BNR61e-137A0A4D9BNR6_SALSN; Homeobox-leucine zipper protein
STRINGXP_009610614.16e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1