PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017333-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 294aa MW: 32991.1 Da PI: 9.627

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017333-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3.1e-32	50	103	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+ekAtPk +l+lm+vkgL+++hvkSHLQ+YR+ SMil_00017333-RA_Salv 50 PRLRWTPELHLCFVHAVDRLGGEEKATPKLVLQLMNVKGLSIAHVKSHLQMYRS 103 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-30	46	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.823	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-15	47	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	50	105	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-9	51	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MIEEMQNVNS DEREMKGKSS SSNSTVEENN GNKKGSSCGS VRQYVRSKTP RLRWTPELHL 60 CFVHAVDRLG GEEKATPKLV LQLMNVKGLS IAHVKSHLQM YRSKKIDDPN EVISQQRLLL 120 DAGDRHIYNL SQLPMLQTFN NQTPISSFRY RDVGLGSPGS SINSSWAAAS NMTRNRLVYE 180 PAASNQINSG YLSSWKFLDQ KSLMNDQRFW KTTTSSTNLY LASKDEEHVE SPRPSKRKLH 240 LDLTLSLKTN TQEDGKKMKS GEADSSLSLS LFSPSKEIHK NPDEVATAAL DLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	51	105	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	51	105	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076824.2	5e-86	uncharacterized protein LOC105160975
TrEMBL	A0A4D8ZMY8	1e-104	A0A4D8ZMY8_SALSN; Uncharacterized protein
STRING	XP_010257080.1	2e-62	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-47	G2-like family protein