PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017205-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family DBB
Protein Properties Length: 298aa    MW: 32377.2 Da    PI: 5.9374
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017205-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06447542
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  SMil_00017205-RA_Salv  4 QCNVCEAAEANVLCCADEAALCWACDQKVHAAnklagkHQRVPL 47
                           7******99*********************66899999999986 PP
2zf-B_box30.76.6e-105294137
               zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                           s+++kC+ ++e    +fC +++ llC++C +++H        H
  SMil_00017205-RA_Salv 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTAnslvsgH 94
                           689*********9*********************545555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.495147IPR000315B-box-type zinc finger
CDDcd000214.58E-8347No hitNo description
SMARTSM003366.2E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578454.44E-54591No hitNo description
SMARTSM003361.1E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3285299IPR000315B-box-type zinc finger
PfamPF006431.3E-75395IPR000315B-box-type zinc finger
CDDcd000212.71E-85596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDQ KVHAANKLAG KHQRVPLSTA SSQMPKCDIC  60
QETVGYFFCL EDRALLCRKC DVAIHTANSL VSGHQRYLLT GVKVGLEGTE AHTEPSLGKT  120
NNAEKISEPE PHSLLKKETP ASTAQYGKSM PVQASGCGDF PLPKPSFTGG SSTGSISQWQ  180
FDEFLGYGDF TQSYNFMDND SSKADSGKLG SSDSSQILLT ADGELEGDDC LGQVPETYWA  240
VPQITSPPTA SGLYWPKSFQ NPPESAVFVP DISSMPLQNL RHHQDHSHAT NSKRRRHF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.11e-159B-box zinc finger protein 22
SwissprotQ9SYM26e-96BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A4D8YAG50.0A0A4D8YAG5_SALSN; Uncharacterized protein
STRINGXP_009625544.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-93light-regulated zinc finger protein 1