PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017098-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 570aa MW: 66051 Da PI: 8.5389 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.7 | 1e-14 | 37 | 128 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 kfY++YAk +GF+vr+ ++ + ++g++ ++ C+++g + ++ + + + +t++ t+Cka+ + + +g +++ ++++ H SMil_00017098-RA_Salv 37 KFYKKYAKACGFQVRMGTKDRA-KDGTVRMQYALCNRQGVWAYTDAS-RINPHTKKRRTTSCKANCMARAIFqvtTGGYYIRTFNEGH 122 6*****************9998.77779999999******9999998.44444444455555555444444333499*********** PP FAR1 86 nHelap 91 +H+++p SMil_00017098-RA_Salv 123 SHSMVP 128 **9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-12 | 37 | 128 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-28 | 249 | 340 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.138 | 413 | 449 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.2E-4 | 420 | 441 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0036 | 424 | 451 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MADDSSSSIA KLCFPKVEDS RRPHTGQMFA NLHDGVKFYK KYAKACGFQV RMGTKDRAKD 60 GTVRMQYALC NRQGVWAYTD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE 120 GHSHSMVPGP SQHFMPANRN VGEIQQMLIM SGIKANIGPM RTFRMVREMV GSYKGVGCTS 180 TDFKNYVRDL KVYNKGSDAH MLVEALSNKQ GLGRGFKFFY DEDEDQKLRR LIWADEISIK 240 NFKMFGEAIS FDATYNTNRY KLIFTPFTGR DNHGKCISFG AALISKEDTE SYSWVLDKFV 300 QIMGRAPRLI ITDQDPGLKR AVSSSWKDTR HRYCMWHISM KVAEKVPIRL RDDQDYKSKF 360 EDIIWSDHED PDAFEENWNN MIDEYELSDN RWFSDMFEDR MFWVPAYFRN GEFIVRQTQS 420 EDDLTCTCNL FNRKGYLCRH VFLVIINSQC DKIPQKYISL RWCKFSLLCP GEAQSELHNE 480 YSQDSSNEEF RYFKIVGEII PHIRLNEDLK NQFFADLMEL KNKFSNTDCM EQTSVAKKKR 540 FEEFYGAAST DSPSVTPLDI SRTKSSSVGG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-55 | FAR1-related sequence 5 |