PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017002-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 343aa MW: 39030.6 Da PI: 5.3689

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017002-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+ SMil_00017002-RA_Salv 63 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQLMGIKGLNIAHVKSHLQMYRS 116 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.211	59	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-30	59	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-15	61	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-22	63	118	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	64	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEISEKECLK RSPCEGMDDE DESEEQNELS FEEAKDGGSS SNSTVEESDK KPPVRPYVRS 60 KMPRLRWTPE LHLRFVHAVE RLGGQDRATP KLVLQLMGIK GLNIAHVKSH LQMYRSKKTD 120 ESNQGLKFME GVDRNIFNLS QLPLLPSFNQ RPNSNLRYGD PTWMHNSAIG LNSRSITRPG 180 FYAERFLSSH YTRLPSLNGS AWRNDDTRLK EEKLGLIHKQ EPWLGQTIQN PIEIDSLKQK 240 LQEKRSSPPN LTQILSQERE KLGLKRKASD AELLDLNLSL GLESRNDDED DDDDDDDGDE 300 HLGLSLYTFP EPSKDRVAKK MKGDFVNVGD EKARGASTLD LTL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEISEKECLK RSPCEGMDDE DESEEQNELS FEEAKDGGSS SNSTVEESDK KPPVRPYVRS  60
KMPRLRWTPE LHLRFVHAVE RLGGQDRATP KLVLQLMGIK GLNIAHVKSH LQMYRSKKTD  120
ESNQGLKFME GVDRNIFNLS QLPLLPSFNQ RPNSNLRYGD PTWMHNSAIG LNSRSITRPG  180
FYAERFLSSH YTRLPSLNGS AWRNDDTRLK EEKLGLIHKQ EPWLGQTIQN PIEIDSLKQK  240
LQEKRSSPPN LTQILSQERE KLGLKRKASD AELLDLNLSL GLESRNDDED DDDDDDDGDE  300
HLGLSLYTFP EPSKDRVAKK MKGDFVNVGD EKARGASTLD LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095220.1	1e-125	uncharacterized protein LOC105174731
TrEMBL	A0A4D9AME3	1e-157	A0A4D9AME3_SALSN; Uncharacterized protein
STRING	Migut.J00123.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-53	G2-like family protein