PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016650-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 233aa    MW: 25416.3 Da    PI: 7.4331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016650-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09120141526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             C++f+r G C +Gd C +aHg
  SMil_00016650-RA_Salv 120 ACPDFRRAGDCARGDACEYAHG 141
                            5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5115144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192116143IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027117142IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-7120141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6121143IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.836151175IPR000571Zinc finger, CCCH-type
SMARTSM0035627151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMMTGDHPRS NPTVKIPSWD YGEEPTAHIQ SPISGALSSQ YDAALAALQR YLPGNRDDDG  60
VPGFDDSGDA FSCDDFRMFE FKVRRCAIAR SHDWTDCPFA HPGEKARRRD PRRHHYSGGA  120
CPDFRRAGDC ARGDACEYAH GVFESWLHPA RYRTQPCKDG TGCRRRVCFF AHTPEQLRVL  180
PPLTTSPDAS PIGVSPRSAA MYSPPPSSPT AGSPPISPSM SSAPSPSQCG VCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.11e-103zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G24e-78C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A4D8YI881e-133A0A4D8YI88_SALSN; Uncharacterized protein
STRINGMigut.A00165.1.p2e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.13e-76C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]