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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016584-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38590 Da PI: 6.5093 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.6 | 8.6e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePw++++k+k +++wyfFs++dkky+tg+r+nrat++g+Wka SMil_00016584-RA_Salv 15 VPPGFRFHPTEEELLHYYLRKKVAAEKIDL-DVIRDVDLNKLEPWEIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKA 101 69****************************.9***************964444222455***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk ++s + + +g++ktLvfy+grap+g+k+dW+mheyrl SMil_00016584-RA_Salv 102 TGRDKVIHS-NFRRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 143 *******99.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-57 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MSEDMNLSVN GNSKVPPGFR FHPTEEELLH YYLRKKVAAE KIDLDVIRDV DLNKLEPWEI 60 QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIHS NFRRIGMRKT 120 LVFYRGRAPH GQKSDWIMHE YRLDDNTPLD STINNVSGDT GPEEGWVVCR VFKKKNYHKA 180 LESPLASSAS ILPRNDGVLD QLLMYMGRSS SCKQESDPAM HFPSHSAAAF LHLPDLQSPT 240 INDDCGFKTP SNELITHEMG TTSSDWVTLD RLVASQLNGQ PPKHFSGADD DFPFSFDHDD 300 QVQQLMNMNN SDRGNETDLW SFGRSSSLSS SSSDPLCHLS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-48 | 15 | 176 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070696.1 | 1e-168 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-121 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2G9GSV0 | 1e-167 | A0A2G9GSV0_9LAMI; Uncharacterized protein | ||||
STRING | XP_009607557.1 | 1e-144 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-112 | NAC family protein |