PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016518-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 227aa MW: 26008.5 Da PI: 8.3236 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.3 | 7.8e-36 | 24 | 116 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y ++ed++ + +isw++ g++fvv+++ efak++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF+++ F+kg SMil_00016518-RA_Salv 24 FLLKTYMMVEDPASDAVISWNDGGTAFVVWQPAEFAKDLLPTLFKHSNFSSFVRQLNTYGFHKVATNR---------WEFSNERFRKG 102 9****************************************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 ++++l++i+r+k + SMil_00016518-RA_Salv 103 ERDQLCEIRRRKAT 116 ***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-37 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-52 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.13E-33 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.4E-18 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-31 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-18 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.4E-18 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
LSVMECESER ELVEYVRKAS PPPFLLKTYM MVEDPASDAV ISWNDGGTAF VVWQPAEFAK 60 DLLPTLFKHS NFSSFVRQLN TYGFHKVATN RWEFSNERFR KGERDQLCEI RRRKATSNKQ 120 QRNVQLVQAA TSDHSDNEEL STSSSEITNL TDENKRLKRE NDALNSELLL LKRKCQQLVD 180 LVAVSGDAQK RPRPLQLRED GGQALKLFGV RLEVGSERVV SQFCKII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-24 | 24 | 113 | 4 | 104 | Putative transcription factor |
5d5x_B | 2e-24 | 24 | 113 | 4 | 104 | Putative transcription factor |
5d5x_E | 2e-24 | 24 | 113 | 4 | 104 | Putative transcription factor |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 193 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075334.1 | 3e-90 | heat stress transcription factor B-3 isoform X1 | ||||
Swissprot | O22230 | 2e-64 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A4D9C591 | 1e-121 | A0A4D9C591_SALSN; Heat shock transcription factor, other eukaryote | ||||
STRING | XP_008360667.1 | 7e-89 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 9e-67 | heat shock transcription factor B3 |