PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016341-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 780aa MW: 84524.1 Da PI: 6.3081 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.8 | 4.1e-32 | 378 | 434 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh SMil_00016341-RA_Salv 378 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPSCPVKKKVERSQ-EGHITEIIYKGAHNHA 434 8****************************************.***************7 PP | |||||||
2 | WRKY | 104 | 8e-33 | 587 | 645 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ SMil_00016341-RA_Salv 587 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 645 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.422 | 372 | 436 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-28 | 375 | 436 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 376 | 436 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-35 | 377 | 435 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 378 | 433 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-37 | 572 | 647 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 579 | 647 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.733 | 582 | 647 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 587 | 646 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-25 | 588 | 645 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 780 aa Download sequence Send to blast |
MPMGGFDDHV AIMGEWMPPS PNPGAFFLSM MNDDVGARLA VESDSGNRRG PEQQGTSRNG 60 DQKDQSEASF GDDETNNCKA AGEPKLSSRG GLMERIAARA GFNAPRLNTE NIRPSDLSKK 120 PEVRSPYLTI PPGLSPTTLL DSPVFLSNSL ILEYDAALHL CDSYLFESLS LCTIQMTVGS 180 LQRRMVFSLL LLPPVVCEHL ADVASISYSL SYAKRSSNPY QDEKVLPSPT TGKFSFASSG 240 DYRDSTLMIG DSDKGKENNF EDINASSFAF KPITESASFP YLNATNKTFP SAGFTVHSNT 300 SLQRQSIEPT KSHLANNSTL FQEASFSKSD LGNNGSSNLL QQTHSSGAMA HSPPFDEQND 360 DGDQRSSGDP NSGGSTADDG YNWRKYGQKH VKGSEYPRSY YKCTHPSCPV KKKVERSQEG 420 HITEIIYKGA HNHAKPPPNR RSTLGSSNAL GDMQLDAEEP GTGDPIWSAV QNGNAAGGWK 480 PDNLETTPSA LPGQEYNNGG TTAPQAQNGT TYESVDGVDG CSTFSNEEEE DDRATRGSMS 540 LGYDGEGDES ESKRRKLETY APEMGGASRP IREPRVVVQT TSEVDILDDG YRWRKYGQKV 600 VKGNPNPRSY YKCTSAGCNV RKHVERASHD LKSVITTYEG KHNHDVPAAR NSGAHVNSGG 660 QNTHPPQQAH AASGNVHRPE PSHLRGSTAW FERPALGSFG LGPGHGFGYR MDQAGLGMGP 720 NQGKLGVHPY LGQQNRAVKE MCYMLPKGEP KVEPVTDAGG LNSSNASSVY EQLMSRLPHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 378 | 648 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 378 | 648 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823165 | 0.0 | KM823165.1 Salvia miltiorrhiza WRKY protein (WRKY42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095658.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 1e-132 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A0D5YAF4 | 0.0 | A0A0D5YAF4_SALMI; WRKY protein | ||||
STRING | PGSC0003DMT400056952 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3711 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-131 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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