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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016333-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33662.9 Da PI: 8.6554 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.3e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+ SMil_00016333-RA_Salv 15 MLPGFRFHPTDEELVEFYLKRKLQHRTLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGT 101 579***************************.89***************9888999********************************* PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl SMil_00016333-RA_Salv 102 DRPIYSSgGPKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 ******955566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-60 | 15 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.424 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-26 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDAKNESDRY VDDIMLPGFR FHPTDEELVE FYLKRKLQHR TLPIELIKQV DIYKYDPWDL 60 PKLASTGEKE WYFYCPRDRK YRNSTRPNRV TGSGFWKATG TDRPIYSSGG PKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSSTTAAA GPPPKTLPPT DSWAICRIFK KANSTANRGL 180 SHTWAASLAE TTSPDAFTYT NFTSGNNVND PINFSGNLVF SDNRGTADLT SMFFNQPAAD 240 HQFSGVEEEE GGLRKNVWEN IKSMGFPFSL PPNLPWESPP CPSEMSSTTY STNKCYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-57 | 1 | 174 | 1 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098618.1 | 1e-145 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 3e-98 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2G9I411 | 1e-137 | A0A2G9I411_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00918.1.p | 1e-129 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 6e-97 | NAC family protein |
Publications ? help Back to Top | |||
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