PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016179-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 285aa    MW: 32483.3 Da    PI: 6.2389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016179-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39.1e-51101341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lp+GfrFhPtdeelvv+yL+++++g+++++  +i+e+d+yk++Pw+Lp +   +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg 
  SMil_00016179-RA_Salv  10 LPAGFRFHPTDEELVVHYLCRRCAGQNIDV-PIIAEIDLYKFDPWQLPGMSLYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGA 96 
                            799***************************.88***************65556799******************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+v +   ++ g+kk Lvfy g+ap g kt+W+mheyrl
  SMil_00016179-RA_Salv  97 DKPVGK--PKTLGIKKALVFYAGKAPGGIKTNWIMHEYRL 134
                            ****98..778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-617165IPR003441NAC domain
PROSITE profilePS5100558.77410165IPR003441NAC domain
PfamPF023658.8E-2711134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKGGDEQLNL PAGFRFHPTD EELVVHYLCR RCAGQNIDVP IIAEIDLYKF DPWQLPGMSL  60
YGEKEWYFFS PRDRKYPNGS RPNRAAGTGY WKATGADKPV GKPKTLGIKK ALVFYAGKAP  120
GGIKTNWIMH EYRLANVDRS ASASASAKRS NLRLDDWVLC RIYNKKGTLE KHCNVDHQEA  180
VQFSDCEEQK PNVNAFPLQS FANDFDVSIP KLHTYSSSSE HVLSSPELKE VQSEAKWSEF  240
ENGSDFQLNY TDFGFQDDPF GAQVQHYDDQ MSLFHFQDIF GFVQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-8321717174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in disease resistance response (PubMed:16115070, PubMed:19625399). May function as repressor of pathogenesis-related proteins (PubMed:16115070). May function in the regulation of host basal defense responses against viral infection (PubMed:19625399). Transcriptional activator involved in responses to wounding and infection with tobamovirus (TMV) (PubMed:22937923). Binds to the DNA sequences 5'-AAAATATCT-3' and 5'AGATTTTT-3' of CYP734A1/BAS1 and CYP72C1/SOB7 promoters, respectively. Acts as suppressor of the brassinosteroid (BR)-inactivating enzymes CYP734A1/BAS1 and CYP72C1/SOB7, and prevents their expression in almost all tissues. Plays a central role in integrating BR homeostasis and seedling development. Regulates the spatial regulation of BR homeostasis and participates in the regulation of hypocotyl elongation and root growth by suppressing BR catabolism. Mediates connection between BR catabolism and photomorphogenesis (PubMed:26493403). Binds to, and transactivates the promoter of the auxin biosynthetic gene NIT2 (PubMed:22965747). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:19625399, ECO:0000269|PubMed:22937923, ECO:0000269|PubMed:22965747, ECO:0000269|PubMed:26493403, ECO:0000269|PubMed:26518251}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, salicylic acid (SA), methyl jasmonate, drought stress, dark and sucrose starvation (PubMed:16115070). Induced by chitin elicitor (chitooctaose) (PubMed:17722694). Induced by salicylic acid and infection with tobamovirus (TMV) (PubMed:19625399). By indole-3-acetonitrile, salicylic acid (SA), sodium nitroprusside (SNP), salt stress and drought stress (PubMed:22965747). Down-regulated by brassinosteroid (BR) and transition from dark to white light (PubMed:26493403). {ECO:0000269|PubMed:16115070, ECO:0000269|PubMed:17722694, ECO:0000269|PubMed:19625399, ECO:0000269|PubMed:22965747, ECO:0000269|PubMed:26493403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097089.11e-154NAC domain-containing protein 2
SwissprotQ9C5981e-113NAC81_ARATH; Protein ATAF2
TrEMBLA0A2G9HDB11e-156A0A2G9HDB1_9LAMI; Uncharacterized protein
STRINGMigut.H00825.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12392481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-109NAC family protein
Publications ? help Back to Top
  1. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]