PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00016022-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 733aa MW: 79367 Da PI: 6.3277

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016022-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg SMil_00016022-RA_Salv 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	4.78E-17	31	162	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.15E-14	36	159	No hit	No description
Gene3D	G3DSA:1.25.40.20	4.2E-17	36	161	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4600	37	66	IPR002110	Ankyrin repeat
Pfam	PF12796	4.6E-11	45	153	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.23	84	114	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	14.875	84	159	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	1.1E-5	85	100	IPR002110	Ankyrin repeat
SMART	SM00248	0.0012	119	151	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.262	119	154	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.1E-5	138	152	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	304	330	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	308	331	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	309	331	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-5	309	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	337	367	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	64	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MCSGPEQSNP NSCTTQGAAI NQSNKKDLNN LSVETDDSLS SLLEFAANND IESFKRLIEV 60 DLSVVDEAGL WYVRKKGSKQ ISPEERTPLM VAATYGSVDV LKLIVALPEV DLNKSCGGNK 120 WTALHCAAFG GSIHAFDVVK LLLSAGADPN IEDSRGLRPG DVIVVPPKLP GAKAALEDLL 180 MNNIYDGSIG ECNLRVNISG SNASSPVLSS SPESRSTCSL LDSVSSPSAP KFVDPAANSV 240 SEKKQYLVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH 360 TQEELRPLYV STGSGVPSPR SVASTASFMD LAAALSLLPG SPTSQSVMSP SAFNQTLSPT 420 ANGMSHSSSG AWTQPNVPTL SLPGSNLQSS RLRSSLSARD IPPEDLNMLQ NYDSQQLILN 480 DMACFSQPRP NSAMLGSGRS QATLTPSNLE ELFSAEIASS PRLSDQAAAY GVFSPSHKSA 540 VLNQFQPQQN ILSPINTNVF SPRNVEHPLL QASFGVSSPR MSPRSLEPAS PMSARLSDFA 600 QRERQQQQQM RSISSRELGS NCASVVGSPA SAWSKWRPAN GKVDWSVGAD HEGGLKRSSS 660 FDRRVADGEE PDLSWVQSLV KESPPEMMEK PAAPSSGAAP SGECLKPHPQ TDSVDNTVLG 720 AWLDQMRLDQ LIV

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MCSGPEQSNP NSCTTQGAAI NQSNKKDLNN LSVETDDSLS SLLEFAANND IESFKRLIEV  60
DLSVVDEAGL WYVRKKGSKQ ISPEERTPLM VAATYGSVDV LKLIVALPEV DLNKSCGGNK  120
WTALHCAAFG GSIHAFDVVK LLLSAGADPN IEDSRGLRPG DVIVVPPKLP GAKAALEDLL  180
MNNIYDGSIG ECNLRVNISG SNASSPVLSS SPESRSTCSL LDSVSSPSAP KFVDPAANSV  240
SEKKQYLVDP SLPDIRNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARQVCFFAH  360
TQEELRPLYV STGSGVPSPR SVASTASFMD LAAALSLLPG SPTSQSVMSP SAFNQTLSPT  420
ANGMSHSSSG AWTQPNVPTL SLPGSNLQSS RLRSSLSARD IPPEDLNMLQ NYDSQQLILN  480
DMACFSQPRP NSAMLGSGRS QATLTPSNLE ELFSAEIASS PRLSDQAAAY GVFSPSHKSA  540
VLNQFQPQQN ILSPINTNVF SPRNVEHPLL QASFGVSSPR MSPRSLEPAS PMSARLSDFA  600
QRERQQQQQM RSISSRELGS NCASVVGSPA SAWSKWRPAN GKVDWSVGAD HEGGLKRSSS  660
FDRRVADGEE PDLSWVQSLV KESPPEMMEK PAAPSSGAAP SGECLKPHPQ TDSVDNTVLG  720
AWLDQMRLDQ LIV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087691.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A4D9C046	0.0	A0A4D9C046_SALSN; Uncharacterized protein
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)
STRING	XP_009599703.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]